| Molecular basis of human nuclear and mitochondrial tRNA 3′ processing | 
| Bhatta A, Kuhle B, (...), Hillen HS | Nature Structural & Molecular Biology | 2025 | | |
| An avoidance segment resolves a lethal nuclear–mitochondrial targeting conflict during ribosome assembly | | Oborská-Oplová M, Geiger AG, (...), Panse VG | Nature Cell Biology | 2025 | | |
| The plastid-encoded RNA polymerase of plant chloroplasts |
| Ahrens FM, do Prado PF, Hillen HS, Pfannschmidt T | Trends in Plant Science | 2025 | | |
| PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division |
| Gobran M, Politi AZ, Welp L, Jakobi J, Urlaub H, Lenart P | EMBO Journal | 2025 | | |
| Structural basis of Nipah virus RNA synthesis |
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| Mechanisms of Enhancer-Mediated Gene Activation in the Context of the 3D Genome | | Papantonis A, Oudelaar AM | Annual Review of Genomics and Human Genetics | 2025 | | |
| Author Correction: Structural basis of Nipah virus RNA synthesis |
| Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS | Nature Communications | 2025 | | |
| Structural and functional insights into tRNA recognition by human tRNA guanine transglycosylase | | Sievers K, Neumann P, (...), Ficner R | Structure | 2024 | | |
| Rapid and synchronous chemical induction of replicative‐like senescence via a small molecule inhibitor |
| Palikyras S, Sofiadis K, (...), Papantonis A | Aging Cell | 2024 | | |
| In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization |
| Oberbeckmann E, Quililan K, Cramer P, Oudelaar AM | Nature Genetics | 2024 | | |
| Hypoxia-driven deSUMOylation of EXOSC10 promotes adaptive changes in the transcriptome profile |
| Filippopoulou C, Thomé CC, (...), Chachami G | Cellular and Molecular Life Sciences | 2024 | | |
| Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair |
| Kokic G, Yakoub G, (...), Luijsterburg MS | Nature Structural & Molecular Biology | 2024 | | |
| Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1 |
| Düring J, Wolter M, (...), Lorenz S | Nature Structural & Molecular Biology | 2024 | | |
| RfaA (YqhY), a novel adaptor protein, controls metabolite-sensitive protein degradation in Bacillus subtilis |
| Wicke D, Lentes S, (...), Stülke J | bioRxiv | 2024 | | |
| Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins |
| Zhang Z, Kumar V, (...), Lührmann R | EMBO Journal | 2024 | | |
| Structure of the multi-subunit chloroplast RNA polymerase |
| do Prado PF, Ahrens FM, (...), Hillen HS | Molecular Cell | 2024 | | |
| Atomic Mutagenesis of N6-Methyladenosine Reveals Distinct Recognition Modes by Human m6A Reader and Eraser Proteins | | Seitz F, Jungnickel T, (...), Höbartner C | Journal of the American Chemical Society | 2024 | | |
| Genome organization across scales: mechanistic insights from <i>in vitro</i> reconstitution studies | | Oberbeckmann E, Oudelaar AM | Biochemical Society Transactions | 2024 | | |
| RfaA (YqhY), a novel adaptor protein, controls metabolite-sensitive protein degradation in Bacillus subtilis |
| Stülke J, Wicke D, (...), Feussner I | Researchsquare | 2024 | | |
| Structural basis of Integrator-dependent RNA polymerase II termination |
| Fianu I, Ochmann M, (...), Cramer P | Nature | 2024 | | |
| Molecular basis of human nuclear and mitochondrial tRNA 3'-processing |
| Bhatta A, Kuhle B, (...), Hillen H | bioRxiv | 2024 | | |
| How Natural Enzymes and Synthetic Ribozymes Generate Methylated Nucleotides in RNA | | Höbartner C, Bohnsack KE, Bohnsack MT | Annual Review of Biochemistry | 2024 | | |
| Coenzyme A biosynthesis in Bacillus subtilis: Discovery of a novel precursor metabolite for salvage and its uptake system |
| Warneke R, Herzberg C, (...), Stülke J | bioRxiv | 2024 | | |
| Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links |
| Siraj A, Bouwmeester R, (...), Sachsenberg T | Proteomics | 2024 | | |
| Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs |
| Xie T, Danieli-Mackay A, (...), Papantonis A | Nature Communications | 2024 | | |
| Kinetics of programmed and spontaneous ribosome sliding along the mRNA |
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| The molecular machinery for maturation of primary mtDNA transcripts |
| Vučković A, Freyer C, Wredenberg A, Hillen HS | Human Molecular Genetics | 2024 | | |
| Structural insights into the cross-exon to cross-intron spliceosome switch |
| Zhang Z, Kumar V, (...), Lührmann R | Nature | 2024 | | |
| Coordinating mitochondrial translation with assembly of the OXPHOS complexes |
| Kremer LS, Rehling P | Human Molecular Genetics | 2024 | | |
| dsRNA formation leads to preferential nuclear export and gene expression |
| Coban I, Lamping J, (...), Krebber H | Nature | 2024 | | |
| The maintenance of oocytes in the mammalian ovary involves extreme protein longevity |
| Harasimov K, Gorry RL, (...), Schuh M | Nature Cell Biology | 2024 | | |
| A roadmap for ribosome assembly in human mitochondria |
| Lavdovskaia E, Hanitsch E, (...), Richter-Dennerlein R | Nature Structural & Molecular Biology | 2024 | | |
| The relationship between nucleosome positioning and higher-order genome folding |
| Aljahani A, Mauksch C, Oudelaar AM | Current Opinion in Cell Biology | 2024 | | |
| Two distinct chromatin modules regulate proinflammatory gene expression |
| Seufert I, Gerosa I, (...), Rippe K | bioRxiv | 2024 | | |
| FASTKD5 processes mitochondrial pre-mRNAs at non-canonical cleavage sites |
| Antonicka H, Weraarpachai W, Vučković A, Hillen HS, Shoubridge EA | bioRxiv | 2024 | | |
| Calcium-triggered (de)ubiquitination events in synapses |
| Ainatzi S, Kaufmann SV, (...), Urlaub H | bioRxiv | 2024 | | |
| Towards sustainable research data management of longitudinal, heterogeneous data from cardiac tissue engineering |
| Smolorz SA, Dittrich GM, (...), Kusch H | German Medical Science GMS Publishing House | 2024 | | |
| A new framework for SubtiWiki, the database for the model organism Bacillus subtilis |
| Elfmann C, Dumann V, van den Berg T, Stülke J | bioRxiv | 2024 | | |
| Kinetic mechanism and determinants of EF-P recruitment to translating ribosomes |
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| Structural basis of Nipah virus replication |
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| A new framework for SubtiWiki, the database for the model organism Bacillus subtilis |
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| Coenzyme A biosynthesis in Bacillus subtilis: discovery of a novel precursor metabolite for salvage and its uptake system |
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| Modelling protein complexes with crosslinking mass spectrometry and deep learning |
| Stahl K, Warneke R, (...), Rappsilber J | Nature Communications | 2024 | | |
| Phosphorylation of P-stalk proteins defines the ribosomal state for interaction with auxiliary protein factors |
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| MDM4 exon skipping upon dysfunctional ribosome assembly |
| Jansen J, Dobbelstein M | Trends in Cell Biology | 2024 | | |
| CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation |
| Karpinska MA, Zhu Y, (...), Oudelaar AM | bioRxiv | 2024 | | |
| Translation factor accelerating peptide bond formation on the ribosome: EF-P and eIF5A as entropic catalysts and a potential drug targets |
| Mudryi V, Peske F, Rodnina M | BBA Advances | 2023 | | |
| Understudied Proteins and Understudied Functions in the Model Bacterium Bacillus subtilis - a Major Challenge in Current Research |
| Stülke J, Wicke D, Meißner J, Warneke R, Elfmann C | Authorea | 2023 | | |
| Understudied Proteins and Understudied Functions in the Model Bacterium Bacillus subtilis – a Major Challenge in Current Research |
| Wicke D, Meißner J, Warneke R, Elfmann C, Stülke J | Molecular Microbiology | 2023 | | |
| PAE Viewer: A webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks |
| Elfmann C, Stülke J | bioRxiv | 2023 | | |
| PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks |
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| Bacillus subtilis, a Swiss Army Knife in Science and Biotechnology | | Stülke J, Grüppen A, Bramkamp M, Pelzer S | Journal of Bacteriology | 2023 | | |
| N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing |
| Wang C, Ulryck N, (...), Graille M | Nucleic Acids Research | 2023 | | |
| Ribozyme‐Catalyzed Late‐Stage Functionalization and Fluorogenic Labeling of RNA | | Scheitl CPM, Okuda T, Adelmann J, Höbartner C | Angewandte Chemie | 2023 | | |
| Extreme structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs |
| Xie T, Danieli-Mackay A, (...), Papantonis A | bioRxiv | 2023 | | |
| Hypoxia-driven deSUMOylation of EXOSC10 promotes adaptive changes in the transcriptome profile |
| Filippopoulou C, Thome CC, (...), Chachami G | bioRxiv | 2023 | | |
| Extended DNA threading through a dual-engine motor module of the activating signal co-integrator 1 complex |
| Jia J, Hilal T, (...), Wahl MC | Nature Communications | 2023 | | |
| Human TRMT2A methylates tRNA and contributes to translation fidelity |
| Witzenberger M, Burczyk S, (...), Niessing D | Nucleic Acids Research | 2023 | | |
| The Mediator complex regulates enhancer-promoter interactions |
| Ramasamy S, Aljahani A, (...), Oudelaar AM | Nature Structural & Molecular Biology | 2023 | | |
| A viral ADP-ribosyltransferase attaches RNA chains to host proteins |
| Wolfram-Schauerte M, Pozhydaieva N, (...), Höfer K | Nature | 2023 | | |
| Cellular functions of eukaryotic RNA helicases and their links to human diseases | | Bohnsack KE, Yi S, Venus S, Jankowsky E, Bohnsack MT | Nature Reviews Molecular Cell Biology | 2023 | | |
| Control of intracellular pH and bicarbonate by CO2 diffusion into human sperm |
| Grahn E, Kaufmann SV, (...), Kaupp U | Nature Communications | 2023 | | |
| Mammalian oocytes store proteins for the early embryo on cytoplasmic lattices |
| Jentoft IM, Bäuerlein FJ, (...), Schuh M | Cell | 2023 | | |
| Structure of the transcribing RNA polymerase II–Elongin complex |
| Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P | Nature Structural & Molecular Biology | 2023 | | |
| Approaching automation of multiple instance orchestration of the menoci web portal |
| Freckmann L, Henke C, (...), Kusch H | Bausteine Forschungsdatenmanagement | 2023 | | |
| Experience with German Research Consortia in the Field of Chemical Biology of Native Nucleic Acid Modifications | | Helm M, Bohnsack MT, (...), Stafforst T | ACS Chemical Biology | 2023 | | |
| The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in <i>Bacillus subtilis in vitro</i> |
| Wicke D, Neumann P, (...), Stülke J | Nucleic Acids Research | 2023 | | |
| Age-associated transcriptional stress due to accelerated elongation and increased stalling of RNAPII |
| Papadakis A, Gyenis A, Pothof J, H. J. Hoeijmakers J, Papantonis A, Beyer A | Nature Genetics | 2023 | | |
| Characterization of nucleolar SUMO isopeptidases unveils a general p53-independent checkpoint of impaired ribosome biogenesis |
| Dönig J, Mende H, (...), Müller S | Nature Communications | 2023 | | |
| GPATCH4 regulates rRNA and snRNA 2′-O-methylation in both DHX15-dependent and DHX15-independent manners |
| Kanwal N, Krogh N, (...), Bohnsack M | Nucleic Acids Research | 2023 | | |
| The ribosomal protein L22 binds the MDM4 pre-mRNA and promotes exon skipping to activate p53 upon nucleolar stress |
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| The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in<i>Bacillus subtilis</i> |
| Wicke D, Neumann P, (...), Stülke J | bioRxiv | 2023 | | |
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