| Property |
Value |
| Working Groups |
RG Bohnsack, 
RG Bohnsack K.E., 
RG Ficner, 
RG Urlaub |
| Subproject |
P04, P09, P12, P15, P18 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
40823814 |
| DOI |
10.1093/nar/gkaf727 |
| Publication Year |
2025 |
| Title |
Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry |
| Journal |
Nucleic Acids Research |
| ISSN |
0305-1048 |
| eISSN |
1362-4962 |
| URL |
https://doi.org/10.1093/nar/gkaf727 |
| Issue |
15 |
| Volume |
53 |
| Journal Abbreviation |
Nucleic Acids Res |
| Authors |
Welp L, Wulf A, Chernev A, Horokhovskyi Y, Moshkovskii S, Dybkov O, Neumann P, Pašen M, Siraj A, Raabe M, Göthert H, Walshe J, Infante D, de A.P. Schwarzer A, Dickmanns A, Johannsson S, Schmitzová J, Wohlgemuth I, Netz E, He Y, Fritzemeier K, Delanghe B, Viner R, Vos S, Oberbeckmann E, Bohnsack K, Bohnsack M, Cramer P, Ficner R, Kohlbacher O, Liepe J, Sachsenberg T, Urlaub H |
| First Author |
Welp L |
| Last Author |
Urlaub H |
External Resources
academic...27.pdfhttps://academic.oup.com/nar/article-pdf/53/15/gkaf727/64075428/gkaf727.pdf Article fulltext
gro-216934http://resolver.sub.uni-goettingen.de/purl?gro-216934 GRO.publications identifier
MSV000094879https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000094879 MassIVE identifier (MSV000094879, DOI: 10.25345/C5TX35J14)
511693https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511693 NCBI taxonomy (Escherichia coli BL21)
0000-0003-0846-5200https://orcid.org/0000-0003-0846-5200 ORCID identifier (Luisa M. Welp)
0000-0002-6553-9619https://orcid.org/0000-0002-6553-9619 ORCID identifier (Yehor Horokhovskyi)
0000-0003-1697-9201https://orcid.org/0000-0003-1697-9201 ORCID identifier (Sergei Moshkovskii)
0000-0001-6005-7242https://orcid.org/0000-0001-6005-7242 ORCID identifier (Olexandr Dybkov)
0000-0003-0129-8112https://orcid.org/0000-0003-0129-8112 ORCID identifier (Piotr D. Neumann)
0000-0002-0652-1574https://orcid.org/0000-0002-0652-1574 ORCID identifier (Martin Pašen)
0009-0006-5748-0027https://orcid.org/0009-0006-5748-0027 ORCID identifier (Arslan Siraj)
0009-0002-0868-6775https://orcid.org/0009-0002-0868-6775 ORCID identifier (Henri Göthert)
0000-0001-7220-3120https://orcid.org/0000-0001-7220-3120 ORCID identifier (James L. Walshe)
0000-0001-9650-4171https://orcid.org/0000-0001-9650-4171 ORCID identifier (Achim Dickmanns)
0000-0001-9538-5983https://orcid.org/0000-0001-9538-5983 ORCID identifier (Jana Schmitzova)
0000-0001-9121-7675https://orcid.org/0000-0001-9121-7675 ORCID identifier (Ingo Wohlgemuth)
0000-0003-2442-7538https://orcid.org/0000-0003-2442-7538 ORCID identifier (Eugen Netz)
0000-0002-9932-3138https://orcid.org/0000-0002-9932-3138 ORCID identifier (Bernard Delanghe)
0000-0003-0550-5545https://orcid.org/0000-0003-0550-5545 ORCID identifier (Rosa Viner)
0000-0003-1985-2994https://orcid.org/0000-0003-1985-2994 ORCID identifier (Seychelle M. Vos)
0000-0001-9123-5689https://orcid.org/0000-0001-9123-5689 ORCID identifier (Elisa Oberbeckmann)
0000-0001-6035-4255https://orcid.org/0000-0001-6035-4255 ORCID identifier (Katherine Elizabeth Bohnsack)
0000-0001-7063-5456https://orcid.org/0000-0001-7063-5456 ORCID identifier (Markus T. Bohnsack)
0000-0001-5454-7755https://orcid.org/0000-0001-5454-7755 ORCID identifier (Patrick Cramer)
0000-0002-1739-6086https://orcid.org/0000-0002-1739-6086 ORCID identifier (Ralf Ficner)
0000-0003-1739-4598https://orcid.org/0000-0003-1739-4598 ORCID identifier (Oliver Kohlbacher)
0000-0003-2515-9707https://orcid.org/0000-0003-2515-9707 ORCID identifier (Juliane Liepe)
0000-0002-2833-6070https://orcid.org/0000-0002-2833-6070 ORCID identifier (Timo Sachsenberg)
0000-0003-1837-5233https://orcid.org/0000-0003-1837-5233 ORCID identifier (Henning Urlaub)
PXD052614http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD052614 Pride proteome dataset (PXD052614)
1312https://prod.mbexc.uni-goettingen.de/literature/publications/1312 Published Data Registry entry (MBExC)
1CQIhttps://www.rcsb.org/structure/1CQI RCSB PDB Identifier (DOI:10.2210/pdb1CQI/pdb, reused)
1id3https://www.rcsb.org/structure/1id3 RCSB PDB Identifier (DOI:10.2210/pdb1id3/pdb, reused)
2bz2https://www.rcsb.org/structure/2bz2 RCSB PDB Identifier (DOI:10.2210/pdb2bz2/pdb, reused)
3iv5https://www.rcsb.org/structure/3iv5 RCSB PDB Identifier (DOI:10.2210/pdb3iv5/pdb, reused)
4rulhttps://www.rcsb.org/structure/4rul RCSB PDB Identifier (DOI:10.2210/pdb4rul/pdb, reused)
4yewhttps://www.rcsb.org/structure/4yew RCSB PDB Identifier (DOI:10.2210/pdb4yew/pdb, reused)
5afihttps://www.rcsb.org/structure/5afi RCSB PDB Identifier (DOI:10.2210/pdb5afi/pdb, reused)
5lsbhttps://www.rcsb.org/structure/5lsb RCSB PDB Identifier (DOI:10.2210/pdb5lsb/pdb, reused)
5ncohttps://www.rcsb.org/structure/5nco RCSB PDB Identifier (DOI:10.2210/pdb5nco/pdb, reused)
5oghhttps://www.rcsb.org/structure/5ogh RCSB PDB Identifier (DOI:10.2210/pdb5ogh/pdb, reused)
5wfehttps://www.rcsb.org/structure/5wfe RCSB PDB Identifier (DOI:10.2210/pdb5wfe/pdb, reused)
6fdfhttps://www.rcsb.org/structure/6fdf RCSB PDB Identifier (DOI:10.2210/pdb6fdf/pdb, reused)
7ogmhttps://www.rcsb.org/structure/7ogm RCSB PDB Identifier (DOI:10.2210/pdb7ogm/pdb, reused)
8uhghttps://www.rcsb.org/structure/8uhg RCSB PDB Identifier (DOI:10.2210/pdb8uhg/pdb, reused)
042nb2s44https://ror.org/042nb2s44 ROR identifier (042nb2s44, Massachusetts Institute of Technology)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
04428zn91https://ror.org/04428zn91 ROR identifier (04428zn91, Thermo Fisher Scientific (Germany))
00pjgxh97https://ror.org/00pjgxh97 ROR identifier (00pjgxh97, Universitätsklinikum Tübingen)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
03a1kwz48https://ror.org/03a1kwz48 ROR identifier (03a1kwz48, University of Tübingen)
SCR_025454https://scicrunch.org/resolver/SCR_025454 SciCrunch identifier (RRID:SCR_025454, AlphaFold)
SCR_018361https://scicrunch.org/resolver/SCR_018361 SciCrunch identifier (RRID:SCR_018361, Biorender)
SCR_014485https://scicrunch.org/resolver/SCR_014485 SciCrunch identifier (RRID:SCR_014485, MaxQuant)
SCR_012042https://scicrunch.org/resolver/SCR_012042 SciCrunch identifier (RRID:SCR_012042, OpenMS)
SCR_014477https://scicrunch.org/resolver/SCR_014477 SciCrunch identifier (RRID:SCR_014477, Proteome Discoverer)
SCR_000305https://scicrunch.org/resolver/SCR_000305 SciCrunch identifier (RRID:SCR_000305, PyMOL)
SCR_002380https://scicrunch.org/resolver/SCR_002380 SciCrunch identifier (RRID:SCR_002380, UniProt)
SCR_008394https://scicrunch.org/resolver/SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)
SCR_000432https://scicrunch.org/resolver/SCR_000432 SciCrunch identifier (RRID:SCR_000432, RStudio)
figshare...d546e4https://figshare.com/s/6b2091a24a327ed546e4 Supplemental material
UP000002311https://www.uniprot.org/proteomes/UP000002311 UniProt Proteome identifier (UP000002311, reused)