| Property |
Value |
| Working Groups |
RG Lorenz, 
RG Urlaub |
| Subproject |
P04 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
38316879 |
| DOI |
10.1038/s41594-023-01207-0 |
| Publication Year |
2024 |
| Title |
Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair |
| Journal |
Nature Structural & Molecular Biology |
| ISSN |
1545-9993 |
| eISSN |
1545-9985 |
| URL |
http://dx.doi.org/10.1038/s41594-023-01207-0 |
| Journal Abbreviation |
Nat Struct Mol Biol |
| Authors |
Kokic G, Yakoub G, van den Heuvel D, Wondergem AP, van der Meer PJ, van der Weegen Y, Chernev A, Fianu I, Fokkens TJ, Lorenz S, Urlaub H, Cramer P, Luijsterburg MS |
| First Author |
Kokic G |
| Last Author |
Luijsterburg MS |
External Resources
29653https://www.addgene.org/29653 Addgene identifier (29653, reused)
48138https://www.addgene.org/48138 Addgene identifier (48138, reused)
48307https://www.addgene.org/48307 Addgene identifier (48307, reused)
48308https://www.addgene.org/48308 Addgene identifier (48308, reused)
nature.c...-0.pdfhttps://www.nature.com/articles/s41594-023-01207-0.pdf Article fulltext
EMD-15825https://www.ebi.ac.uk/pdbe/emdb/EMD-15825 EMBL-EBI EMDB identifier (EMD-15825)
EMD-15827https://www.ebi.ac.uk/pdbe/emdb/EMD-15827 EMBL-EBI EMDB identifier (EMD-15827)
EMD-15829https://www.ebi.ac.uk/pdbe/emdb/EMD-15829 EMBL-EBI EMDB identifier (EMD-15829)
gro-2/141936http://resolver.sub.uni-goettingen.de/purl?gro-2/141936 GRO.publications identifier
7108https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=7108 NCBI taxonomy (fall armyworm, Spodoptera frugiperda)
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
0000-0001-8912-7099https://orcid.org/0000-0001-8912-7099 ORCID identifier (Goran Kokic)
0000-0003-2727-7651https://orcid.org/0000-0003-2727-7651 ORCID identifier (George Yakoub)
0000-0001-7616-6689https://orcid.org/0000-0001-7616-6689 ORCID identifier (Paula Johanna van der Meer)
0000-0002-8508-114Xhttps://orcid.org/0000-0002-8508-114X ORCID identifier (Isaac Fianu)
0000-0002-9639-2381https://orcid.org/0000-0002-9639-2381 ORCID identifier (Sonja Gisela Lorenz)
0000-0003-1837-5233https://orcid.org/0000-0003-1837-5233 ORCID identifier (Henning Urlaub)
0000-0001-5454-7755https://orcid.org/0000-0001-5454-7755 ORCID identifier (Patrick Cramer)
0000-0001-5796-6541https://orcid.org/0000-0001-5796-6541 ORCID identifier (Martijn S. Luijsterburg)
PXD042388http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD042388 Pride proteome dataset (PXD042388)
8B3Dhttps://www.rcsb.org/structure/8B3D RCSB PDB Identifier (DOI:10.2210/pdb 8B3D/pdb)
8B3Ghttps://www.rcsb.org/structure/8B3G RCSB PDB Identifier (DOI:10.2210/pdb8B3G/pdb)
8B3Ihttps://www.rcsb.org/structure/8B3I RCSB PDB Identifier (DOI:10.2210/pdb8B3I/pdb)
1PQVhttps://www.rcsb.org/structure/1PQV RCSB PDB Identifier (DOI:10.2210/pdb1PQV/pdb, reused)
4AP4https://www.rcsb.org/structure/4AP4 RCSB PDB Identifier (DOI:10.2210/pdb4AP4/pdb, reused)
6TTUhttps://www.rcsb.org/structure/6TTU RCSB PDB Identifier (DOI:10.2210/pdb6TTU/pdb, reused)
7OO3https://www.rcsb.org/structure/7OO3 RCSB PDB Identifier (DOI:10.2210/pdb7OO3/pdb, reused)
4/12https://rdp.sfb1565.uni-goettingen.de/archive/4/12 Research Data Archive (supplemental material)
027bh9e22https://ror.org/027bh9e22 ROR identifier (027bh9e22, Leiden University)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
CVCL_0063https://scicrunch.org/resolver/CVCL_0063 SciCrunch identifier (RRID:CVCL_0063, HEK293T)
CVCL_0518https://scicrunch.org/resolver/CVCL_0518 SciCrunch identifier (RRID:CVCL_0518, Sf21)
CVCL_0549https://scicrunch.org/resolver/CVCL_0549 SciCrunch identifier (RRID:CVCL_0549, Sf9)
CVCL_0042https://scicrunch.org/resolver/CVCL_0042 SciCrunch identifier (RRID:CVCL_0042, U2OS)
SCR_010279https://scicrunch.org/resolver/SCR_010279 SciCrunch identifier (RRID:SCR_010279, Adobe Illustrator)
SCR_014222https://scicrunch.org/resolver/SCR_014222 SciCrunch identifier (RRID:SCR_014222, Coot)
SCR_016501https://scicrunch.org/resolver/SCR_016501 SciCrunch identifier (RRID:SCR_016501, cryoSPARC)
SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)
SCR_013715https://scicrunch.org/resolver/SCR_013715 SciCrunch identifier (RRID:SCR_013715, Image Studio Lite)
SCR_003070https://scicrunch.org/resolver/SCR_003070 SciCrunch identifier (RRID:SCR_003070, ImageJ)
SCR_016137https://scicrunch.org/resolver/SCR_016137 SciCrunch identifier (RRID:SCR_016137, Microsoft Excel)
SCR_014226https://scicrunch.org/resolver/SCR_014226 SciCrunch identifier (RRID:SCR_014226, MolProbity)
SCR_014224https://scicrunch.org/resolver/SCR_014224 SciCrunch identifier (RRID:SCR_014224, Phenix)
SCR_000084https://scicrunch.org/resolver/SCR_000084 SciCrunch identifier (RRID:SCR_000084, pLink)
SCR_018333https://scicrunch.org/resolver/SCR_018333 SciCrunch identifier (RRID:SCR_018333, PlotsOfData)
SCR_016274https://scicrunch.org/resolver/SCR_016274 SciCrunch identifier (RRID:SCR_016274, RELION)
SCR_017293https://scicrunch.org/resolver/SCR_017293 SciCrunch identifier (RRID:SCR_017293, SerialEM)
SCR_004097https://scicrunch.org/resolver/SCR_004097 SciCrunch identifier (RRID:SCR_004097, UCSF Chimera)
SCR_018071https://scicrunch.org/resolver/SCR_018071 SciCrunch identifier (RRID:SCR_018071, Warp)
SCR_013672https://scicrunch.org/resolver/SCR_013672 SciCrunch identifier (RRID:SCR_013672, ZEN Digital Imaging for Light Microscopy)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM1_ESM.pdf Supplemental material
goeseek.gwdguser.de/studies/146https://goeseek.gwdguser.de/studies/146 Supplemental material (goeseek study)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM2_ESM.pdf Supplemental material (reporting summary)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM3_ESM.pdf Supplemental material (peer review)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM4_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM5_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM6_ESM.mp4 Supplemental material (video)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM7_ESM.xlsx Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM8_ESM.pdf Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM9_ESM.xlsx Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM10_ESM.pdf Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM11_ESM.pdf Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM12_ESM.xlsx Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM13_ESM.pdf Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM14_ESM.xlsx Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM15_ESM.pdf Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM16_ESM.pdf Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM17_ESM.xlsx Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM18_ESM.xlsx Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM19_ESM.pdf Supplemental material (source data)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41594-023-01207-0/MediaObjects/41594_2023_1207_MOESM20_ESM.pdf Supplemental material (source data)
Q128692721https://www.wikidata.org/wiki/Q128692721 Wikidata ID
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0014 |
|
primary |
GFP |
AB_390913 |
Anti-GFP antibody |
| primary-0015 |
|
primary |
GFP |
AB_303395 |
Anti-GFP antibody |
| primary-0017 |
|
primary |
H2AX |
AB_309864 |
Anti-phospho-Histone H2A.X (Ser139) Antibody |
| primary-0018 |
|
primary |
TUBA4A |
AB_477583 |
Anti-α-Tubulin antibody |
| primary-0019 |
|
primary |
|
|
CSA Antikörper (D-2) |
| primary-0020 |
|
primary |
ERCC8 |
AB_2783825 |
Anti-ERCC8 antibody [EPR9237] |
| primary-0021 |
|
primary |
|
AB_668958 |
CSB Antikörper (H-300) |
| primary-0022 |
|
primary |
ERCC6 |
Bethyl A301-345A |
CSB/ERCC6 Polyclonal Antibody |
| primary-0025 |
|
primary |
|
AB_2247962 |
TFIIH p62 Antikörper (G-10) |
| primary-0026 |
|
primary |
XPB |
|
Anti-XPB Antibody, clone 15TF2-1B3 |
| primary-0027 |
|
primary |
RPO21 |
AB_304749 |
Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S2) antibody |
| primary-0030 |
|
primary |
RPB1 |
|
RPB1 |
| primary-0031 |
|
primary |
|
AB_2051891 |
Mono- and polyubiquitinylated conjugates monoclonal antibody (FK2) |
| primary-0032 |
|
primary |
RL40 |
AB_331292 |
Ubiquitin (P4D1) Mouse mAb |
| secondary-0002 |
|
secondary |
|
AB_10719218 |
Goat-anti-rabbit IgG (H+L), HRP conjugate antibody |
| secondary-0016 |
|
secondary |
|
AB_141780 |
Goat anti-Mouse IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 555 |
| secondary-0023 |
|
secondary |
|
|
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor™ 647 |
| secondary-0024 |
|
secondary |
|
AB_10559194 |
Goat Anti-Mouse IgG (H+L), Highly Cross-Adsorbed |
| secondary-0028 |
|
secondary |
|
AB_10582887 |
Goat Anti-Rabbit IgG (H+L), Highly Cross-Adsorbed |