| Property |
Value |
| Working Groups |
RG Papantonis |
| Subproject |
P03 |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2024.08.03.606159 |
| Publication Year |
2024 |
| Title |
Two distinct chromatin modules regulate proinflammatory gene expression |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
http://dx.doi.org/10.1101/2024.08.03.606159 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Nature Cell Biology here: doi:10.1038/s41556-025-01819-2 |
| Authors |
Seufert I, Gerosa I, Varamogianni-Mamatsi V, Vladimirova A, Sen E, Mantz S, Rademacher A, Schumacher S, Liakopoulos P, Kolovos P, Anders S, Mallm J, Papantonis A, Rippe K |
| First Author |
Seufert I |
| Last Author |
Rippe K |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2024.08.03.606159v1.full.pdf Article fulltext
10.6019/S-BIAD1294https://doi.org/10.6019/S-BIAD1294 DOI (10.6019/S-BIAD1294, BioImage Archive)
gro-2/149999http://resolver.sub.uni-goettingen.de/purl?gro-2/149999 GRO.publications identifier
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
GSE273426https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273426 NCBI GEO Dataset (GSE273426)
GSE273427https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273427 NCBI GEO Dataset (GSE273427)
GSE273428https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273428 NCBI GEO Dataset (GSE273428)
GSE273429https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273429 NCBI GEO Dataset (GSE273429)
GSE273430https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273430 NCBI GEO Dataset (GSE273430)
GSE63525https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525 NCBI GEO Dataset (GSE63525, reused)
0000-0001-9811-3836https://orcid.org/0000-0001-9811-3836 ORCID identifier (Isabelle Seufert)
0009-0009-5468-7868https://orcid.org/0009-0009-5468-7868 ORCID identifier (Irene Gerosa)
0009-0006-7800-9920https://orcid.org/0009-0006-7800-9920 ORCID identifier (Vassiliki Varamogianni-Mamatsi)
0009-0009-5789-7051https://orcid.org/0009-0009-5789-7051 ORCID identifier (Anastasiya Vladimirova)
0009-0005-0816-2076https://orcid.org/0009-0005-0816-2076 ORCID identifier (Ezgi Sen)
0000-0003-3054-3121https://orcid.org/0000-0003-3054-3121 ORCID identifier (Anne Rademacher)
0000-0003-2292-9286https://orcid.org/0000-0003-2292-9286 ORCID identifier (Sabrina Schumacher)
0000-0002-0065-8764https://orcid.org/0000-0002-0065-8764 ORCID identifier (Panagiotis Liakopoulos)
0000-0002-0787-6158https://orcid.org/0000-0002-0787-6158 ORCID identifier (Petros Kolovos)
0000-0003-4868-1805https://orcid.org/0000-0003-4868-1805 ORCID identifier (Simon Anders)
0000-0002-7059-4030https://orcid.org/0000-0002-7059-4030 ORCID identifier (Jan-Philipp Mallm)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073 ORCID identifier (Argyris Papantonis)
0000-0001-9951-9395https://orcid.org/0000-0001-9951-9395 ORCID identifier (Karsten Rippe)
113https://rdp.sfb1565.uni-goettingen.de/literature/publications/113 Published Data Registry entry (CRC 1565, final article)
4/21https://rdp.sfb1565.uni-goettingen.de/archive/4/21 Research Data Archive (supplemental material)
03bfqnx40https://ror.org/03bfqnx40 ROR identifier (03bfqnx40, Democritus University of Thrace)
04cdgtt98https://ror.org/04cdgtt98 ROR identifier (04cdgtt98, German Cancer Research Center)
038t36y30https://ror.org/038t36y30 ROR identifier (038t36y30, Heidelberg University)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_016381https://scicrunch.org/resolver/SCR_016381 SciCrunch identifier (RRID:SCR_016381, Illumina NextSeq 550 System)
SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)
SCR_007322https://scicrunch.org/resolver/SCR_007322 SciCrunch identifier (RRID:SCR_007322, Seurat)
github.com/RippeLab/RWireXhttps://github.com/RippeLab/RWireX Supplemental material (code)
github.com/RippeLab/padFISHhttps://github.com/RippeLab/padFISH Supplemental material (code)
goeseek.gwdguser.de/studies/278https://goeseek.gwdguser.de/studies/278 Supplemental material (goeseek study)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC1/embed/media-1.pdf?download=true Supplemental material
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC2/embed/media-2.xlsx?download=true Supplemental material (table)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC3/embed/media-3.xlsx?download=true Supplemental material (table)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC4/embed/media-4.xlsx?download=true Supplemental material (table)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC5/embed/media-5.xlsx?download=true Supplemental material (table)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC6/embed/media-6.xlsx?download=true Supplemental material (table)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/08/06/2024.08.03.606159/DC7/embed/media-7.xlsx?download=true Supplemental material (table)
10.5281/zenodo.13142236https://doi.org/10.5281/zenodo.13142236 Zenodo identifier (10.5281/zenodo.13142236)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0096 |
|
primary |
|
AB_776751 |
Anti-NF-kB p65 antibody [E379] |
| secondary-0097 |
|
secondary |
|
AB_2535812 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor™ 647 |