| Property |
Value |
| Working Groups |
RG Papantonis |
| Subproject |
P03 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
39979259 |
| DOI |
10.1038/s41467-025-56889-5 |
| Publication Year |
2025 |
| Title |
Increasingly efficient chromatin binding of cohesin and CTCF supports chromatin architecture formation during zebrafish embryogenesis |
| Journal |
Nature Communications |
| ISSN |
2041-1723 |
| eISSN |
2041-1723 |
| URL |
https://doi.org/10.1038/s41467-025-56889-5 |
| Issue |
1 |
| Volume |
16 |
| Journal Abbreviation |
Nat Commun |
| Authors |
Coßmann J, Kos PI, Varamogianni-Mamatsi V, Assenheimer DS, Bischof TA, Kuhn T, Vomhof T, Papantonis A, Giorgetti L, Gebhardt JCM |
| First Author |
Coßmann J |
| Last Author |
Gebhardt JCM |
External Resources
69542https://www.addgene.org/69542 Addgene identifier (69542, reused)
nature.c...-5.pdfhttps://www.nature.com/articles/s41467-025-56889-5.pdf Article fulltext
gro-2/147965http://resolver.sub.uni-goettingen.de/purl?gro-2/147965 GRO.publications identifier
10.5061/dryad.3bk3j9ks8https://doi.org/10.5061/dryad.3bk3j9ks8 DOI (10.5061/dryad.3bk3j9ks8, Dryad Dataset)
7955https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=7955 NCBI taxonomy (zebrafish, Danio rerio)
0000-0002-3625-0939https://orcid.org/0000-0002-3625-0939 ORCID identifier (Pavel Kos)
0009-0006-7800-9920https://orcid.org/0009-0006-7800-9920 ORCID identifier (Vassiliki Varamogianni-Mamatsi)
0009-0000-0201-7373https://orcid.org/0009-0000-0201-7373 ORCID identifier (Tobias Bischof)
0000-0003-0194-7186https://orcid.org/0000-0003-0194-7186 ORCID identifier (Thomas Vomhof)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073 ORCID identifier (Argyris Papantonis)
0000-0002-9664-9087https://orcid.org/0000-0002-9664-9087 ORCID identifier (Luca Giorgetti)
0000-0003-1900-600Xhttps://orcid.org/0000-0003-1900-600X ORCID identifier (J. Christof M. Gebhardt)
01bmjkv45https://ror.org/01bmjkv45 ROR identifier (01bmjkv45, Friedrich Miescher Institute)
032000t02https://ror.org/032000t02 ROR identifier (032000t02, Universität Ulm)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
GSE130944https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130944 NCBI GEO Dataset (GSE130944, reused)
GSE133437https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133437 NCBI GEO Dataset (GSE133437, reused)
5/49https://rdp.sfb1565.uni-goettingen.de/archive/5/49 Research Data Archive (supplemental material)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM1_ESM.pdf Supplemental material
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM2_ESM.pdf Supplemental material
github.com/polly-code/lammps_lehttps://github.com/polly-code/lammps_le Supplemental material (code)
gitlab.com/GebhardtLab/TrackIthttps://gitlab.com/GebhardtLab/TrackIt Supplemental material (code)
goeseek.gwdguser.de/studies/279https://goeseek.gwdguser.de/studies/279 Supplemental material (goeseek study)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM11_ESM.pdf Supplemental material (reporting summary)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM12_ESM.pdf Supplemental material (peer review)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM13_ESM.xlsx Supplemental material (source data)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM3_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM4_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM5_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM6_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM7_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM8_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM9_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-56889-5/MediaObjects/41467_2025_56889_MOESM10_ESM.mp4 Supplemental material (video)
SCR_002285https://scicrunch.org/resolver/SCR_002285 SciCrunch identifier (RRID:SCR_002285, Fiji)
SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)
SCR_014210https://scicrunch.org/resolver/SCR_014210 SciCrunch identifier (RRID:SCR_014210, Image Lab Software)
SCR_014325https://scicrunch.org/resolver/SCR_014325 SciCrunch identifier (RRID:SCR_014325, LabView)
SCR_001622https://scicrunch.org/resolver/SCR_001622 SciCrunch identifier (RRID:SCR_001622, MATLAB)
SCR_014329https://scicrunch.org/resolver/SCR_014329 SciCrunch identifier (RRID:SCR_014329, NIS-Elements)
SCR_014551https://scicrunch.org/resolver/SCR_014551 SciCrunch identifier (RRID:SCR_014551, Olympus cellSens Software)
10.5281/zenodo.7092295https://doi.org/10.5281/zenodo.7092295 Zenodo identifier (10.5281/zenodo.7092295)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0239 |
|
primary |
RAD21 |
|
primary anti-Rad21 antibody |
| primary-0241 |
|
primary |
CTCF |
AB_11144295 |
anti-CTCF antibody |
| primary-0242 |
|
primary |
TUBG1 |
AB_297920 |
anti-γ-Tubulin antibody |
| primary-0243 |
|
primary |
H2B |
|
antiHistone H2B antibody |
| primary-0244 |
|
primary |
SMC3 |
|
Anti-Smc3 antibody |
| primary-0245 |
|
primary |
HA |
AB_2533049 |
anti-HA Tag antibody |