| Property |
Value |
| Working Groups |
RG Oudelaar |
| Subproject |
P02 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
41145704 |
| DOI |
10.1038/s44320-025-00165-7 |
| Publication Year |
2025 |
| Title |
FACT depletion demonstrates a role for nucleosome organization in TAD formation |
| Journal |
Molecular Systems Biology |
| eISSN |
1744-4292 |
| URL |
https://doi.org/10.1038/s44320-025-00165-7 |
| Journal Abbreviation |
Mol Syst Biol |
| Authors |
Mauksch C, Zhu Y, Velychko T, Sagropoulou S, Aljahani A, Ramasamy S, Žumer K, Oudelaar AM |
| First Author |
Mauksch C |
| Last Author |
Oudelaar AM |
External Resources
embopres...d=truehttps://www.embopress.org/doi/pdf/10.1038/s44320-025-00165-7?download=true Article fulltext
S-SCDT-1...0165-7https://www.ebi.ac.uk/biostudies/studies/S-SCDT-10_1038-S44320-025-00165-7 EMBL-EBI biostudies identifier (S-SCDT-10_1038-S44320-025-00165-7)
GSE284561https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284561 NCBI GEO Dataset (GSE284561)
GSE178593https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178593 NCBI GEO Dataset (GSE178593, reused)
GSE242374https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242374 NCBI GEO Dataset (GSE242374, reused)
0009-0006-1403-2136https://orcid.org/0009-0006-1403-2136 ORCID identifier (Clemens Mauksch)
0009-0008-3909-1321https://orcid.org/0009-0008-3909-1321 ORCID identifier (Yi Zhu)
0000-0003-4087-3730https://orcid.org/0000-0003-4087-3730 ORCID identifier (Taras Velychko)
0009-0005-4438-3618https://orcid.org/0009-0005-4438-3618 ORCID identifier (Spyridoula Sagropoulou)
0000-0003-0617-694Xhttps://orcid.org/0000-0003-0617-694X ORCID identifier (Shyam Ramasamy)
0000-0003-3986-6509https://orcid.org/0000-0003-3986-6509 ORCID identifier (Kristina Žumer)
0000-0002-3425-0476https://orcid.org/0000-0002-3425-0476 ORCID identifier (A. Marieke Oudelaar)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
00f54p054https://ror.org/00f54p054 ROR identifier (00f54p054, Stanford University)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
AB_307121https://scicrunch.org/resolver/AB_307121 SciCrunch identifier (RRID:AB_307121)
AB_390918https://scicrunch.org/resolver/AB_390918 SciCrunch identifier (RRID:AB_390918)
AB_2737370https://scicrunch.org/resolver/AB_2737370 SciCrunch identifier (RRID:AB_2737370)
AB_2753160https://scicrunch.org/resolver/AB_2753160 SciCrunch identifier (RRID:AB_2753160)
CVCL_Z232https://scicrunch.org/resolver/CVCL_Z232 SciCrunch identifier (RRID:CVCL_Z232, Schneider 2)
SCR_016368https://scicrunch.org/resolver/SCR_016368 SciCrunch identifier (RRID:SCR_016368, Bowtie 2)
SCR_024194https://scicrunch.org/resolver/SCR_024194 SciCrunch identifier (RRID:SCR_024194, Cooler)
SCR_026118https://scicrunch.org/resolver/SCR_026118 SciCrunch identifier (RRID:SCR_026118, cooltools)
SCR_016366https://scicrunch.org/resolver/SCR_016366 SciCrunch identifier (RRID:SCR_016366, Deeptools)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_014583https://scicrunch.org/resolver/SCR_014583 SciCrunch identifier (RRID:SCR_014583, FastQC)
SCR_023614https://scicrunch.org/resolver/SCR_023614 SciCrunch identifier (RRID:SCR_023614, Illumina NextSeq 2000 system)
SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)
SCR_026110https://scicrunch.org/resolver/SCR_026110 SciCrunch identifier (RRID:SCR_026110, Mustache)
SCR_011847https://scicrunch.org/resolver/SCR_011847 SciCrunch identifier (RRID:SCR_011847, Trim Galore)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44320-025-00165-7/MediaObjects/44320_2025_165_MOESM2_ESM.pdf Supplemental material (figure)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44320-025-00165-7/MediaObjects/44320_2025_165_MOESM1_ESM.pdf Supplemental material (peer review)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0169 |
|
primary |
H2Av |
AB_2737370 |
Spike-in Antibody |
| primary-0172 |
|
primary |
CTCF |
AB_2753160 |
CTCF Antibody |
| primary-0173 |
|
primary |
SMC1A |
AB_307121 |
Anti-SMC1A antibody |
| primary-0216 |
|
primary |
HA |
AB_390918 |
Anti-HA mit hoher Affinität |