| Property |
Value |
| Working Groups |
RG Stülke |
| Subproject |
P11 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
39251624 |
| DOI |
10.1038/s41467-024-51771-2 |
| Publication Year |
2024 |
| Title |
Modelling protein complexes with crosslinking mass spectrometry and deep learning |
| Journal |
Nature Communications |
| ISSN |
2041-1723 |
| eISSN |
2041-1723 |
| URL |
http://dx.doi.org/10.1038/s41467-024-51771-2 |
| Issue |
1 |
| Volume |
15 |
| Journal Abbreviation |
Nat Commun |
| Authors |
Stahl K, Warneke R, Demann L, Bremenkamp R, Hormes B, Brock O, Stülke J, Rappsilber J |
| First Author |
Stahl K |
| Last Author |
Rappsilber J |
External Resources
nature.c...-2.pdfhttps://www.nature.com/articles/s41467-024-51771-2.pdf Article fulltext
EMD-10611https://www.ebi.ac.uk/pdbe/emdb/EMD-10611 EMBL-EBI EMDB identifier (EMD-10611, reused)
EMD-10612https://www.ebi.ac.uk/pdbe/emdb/EMD-10612 EMBL-EBI EMDB identifier (EMD-10612, reused)
EMD-10613https://www.ebi.ac.uk/pdbe/emdb/EMD-10613 EMBL-EBI EMDB identifier (EMD-10613, reused)
EMD-10614https://www.ebi.ac.uk/pdbe/emdb/EMD-10614 EMBL-EBI EMDB identifier (EMD-10614, reused)
gro-2/145830http://resolver.sub.uni-goettingen.de/purl?gro-2/145830 GRO.publications identifier
224308https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=224308 NCBI taxonomy (Bacillus subtilis subsp. subtilis str. 168)
0000-0002-9990-7643https://orcid.org/0000-0002-9990-7643 ORCID identifier (Kolja Stahl)
0009-0004-5964-1010https://orcid.org/0009-0004-5964-1010 ORCID identifier (Robert Warneke)
0000-0002-3719-7754https://orcid.org/0000-0002-3719-7754 ORCID identifier (Oliver Brock)
0000-0001-5881-5390https://orcid.org/0000-0001-5881-5390 ORCID identifier (Jörg Stülke)
0000-0001-5999-1310https://orcid.org/0000-0001-5999-1310 ORCID identifier (Juri Rappsilber)
PXD020453http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD020453 Pride proteome dataset (PXD020453, reused)
PXD035362http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035362 Pride proteome dataset (PXD035362, reused)
PXD035508http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035508 Pride proteome dataset (PXD035508, reused)
PXD035519http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035519 Pride proteome dataset (PXD035519, reused)
4/19https://rdp.sfb1565.uni-goettingen.de/archive/4/19 Research Data Archive (supplemental material)
6WVKhttps://www.rcsb.org/structure/6WVK RCSB PDB Identifier (DOI:10.2210/pdb6WVK/pdb, reused)
6ZX9https://www.rcsb.org/structure/6ZX9 RCSB PDB Identifier (DOI:10.2210/pdb6ZX9/pdb, reused)
pdb-dev....000221https://pdb-dev.wwpdb.org/entry.html?PDBDEV_00000221 RCSB PDB identifier (PDBDEV_00000221)
pdb-dev....000003https://pdb-dev.wwpdb.org/entry.html?PDBDEV_G_1000003 RCSB PDB Identifier (PDBDEV_G_1000003)
001w7jn25https://ror.org/001w7jn25 ROR identifier (001w7jn25, Charité - Universitätsmedizin Berlin)
03v4gjf40https://ror.org/03v4gjf40 ROR identifier (03v4gjf40, Technische Universität Berlin)
01nrxwf90https://ror.org/01nrxwf90 ROR identifier (01nrxwf90, University of Edinburgh)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
SCR_025454https://scicrunch.org/resolver/SCR_025454 SciCrunch identifier (RRID:SCR_025454, AlphaFold)
SCR_000305https://scicrunch.org/resolver/SCR_000305 SciCrunch identifier (RRID:SCR_000305, PyMOL)
SCR_015872https://scicrunch.org/resolver/SCR_015872 SciCrunch identifier (RRID:SCR_015872, UCSF ChimeraX)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM1_ESM.pdf Supplemental material
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM3_ESM.pdf Supplemental material
github.c...aLink2https://github.com/Rappsilber-Laboratory/AlphaLink2 Supplemental material (code)
goeseek.gwdguser.de/studies/210https://goeseek.gwdguser.de/studies/210 Supplemental material (goeseek study)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM5_ESM.pdf Supplemental material (peer review)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM2_ESM.pdf Supplemental material (reporting summary)
static-c...SM.ziphttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM6_ESM.zip Supplemental material (source data)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-51771-2/MediaObjects/41467_2024_51771_MOESM4_ESM.mp4 Supplemental material (video)
10.5281/zenodo.8007238https://doi.org/10.5281/zenodo.8007238 Zenodo identifier (10.5281/zenodo.8007238)