| Property |
Value |
| Working Groups |
RG Papantonis |
| Subproject |
P03 |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2023.04.20.537702 |
| Publication Year |
2023 |
| Title |
Extreme structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
http://dx.doi.org/10.1101/2023.04.20.537702 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Nature Communications here: doi:10.1038/s41467-024-48053-2 |
| Authors |
Xie T, Danieli-Mackay A, Buccarelli M, Barbieri M, Papadionysiou I, Giorgio D’Alessandris Q, Übelmesser N, Vinchure OS, Lauretti L, Fotia G, Wang X, Ricci-Vitiani L, Gopalakrishnan J, Pallini R, Papantonis A |
| First Author |
Xie T |
| Last Author |
Papantonis A |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2023.04.20.537702v1.full.pdf Article fulltext
gro-2/139968http://resolver.sub.uni-goettingen.de/purl?gro-2/139968 GRO.publications identifier
GSE229966https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229966 NCBI GEO Dataset (GSE229966)
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
0000-0002-6648-7697https://orcid.org/0000-0002-6648-7697 ORCID identifier (Ting Xie)
0000-0001-7337-3797https://orcid.org/0000-0001-7337-3797 ORCID identifier (Adi Danieli-Mackay)
0000-0003-1157-4694https://orcid.org/0000-0003-1157-4694 ORCID identifier (Mariachiara Buccarelli)
0000-0002-9080-631Xhttps://orcid.org/0000-0002-9080-631X ORCID identifier (Mariano Barbieri)
0000-0002-2953-9291https://orcid.org/0000-0002-2953-9291 ORCID identifier (Quintino Giorgio D’Alessandris)
0000-0003-3141-1526https://orcid.org/0000-0003-3141-1526 ORCID identifier (Nadine Übelmesser)
0000-0003-0809-4235https://orcid.org/0000-0003-0809-4235 ORCID identifier (Omkar Suhas Vinchure)
0000-0002-6463-055Xhttps://orcid.org/0000-0002-6463-055X ORCID identifier (Liverana Lauretti)
0000-0002-6445-3872https://orcid.org/0000-0002-6445-3872 ORCID identifier (Giorgio Fotia)
0000-0002-3531-2157https://orcid.org/0000-0002-3531-2157 ORCID identifier (Xiaotao Wang)
0000-0001-7336-5615https://orcid.org/0000-0001-7336-5615 ORCID identifier (Lucia Ricci-Vitiani)
0000-0002-4611-8827https://orcid.org/0000-0002-4611-8827 ORCID identifier (Roberto Pallini)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073 ORCID identifier (Argyris Papantonis)
45https://rdp.sfb1565.uni-goettingen.de/literature/publications/45 Published Data Registry entry (CRC 1565, final article)
4/7https://rdp.sfb1565.uni-goettingen.de/archive/4/7 Research Data Archive (supplemental material)
00rg70c39https://ror.org/00rg70c39 ROR identifier (00rg70c39, Agostino Gemelli University Polyclinic)
03jdxdk20https://ror.org/03jdxdk20 ROR identifier (03jdxdk20, Center for Advanced Studies Research and Development in Sardinia)
034t30j35https://ror.org/034t30j35 ROR identifier (034t30j35, Chinese Academy of Sciences)
006k2kk72https://ror.org/006k2kk72 ROR identifier (006k2kk72, Düsseldorf University Hospital)
013q1eq08https://ror.org/013q1eq08 ROR identifier (013q1eq08, Fudan University)
024z2rq82https://ror.org/024z2rq82 ROR identifier (024z2rq82, Heinrich Heine University Düsseldorf)
02hssy432https://ror.org/02hssy432 ROR identifier (02hssy432, Istituto Superiore di Sanità)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
SCR_025854https://scicrunch.org/resolver/SCR_025854 SciCrunch identifier (RRID:SCR_025854, Arriba)
SCR_010910https://scicrunch.org/resolver/SCR_010910 SciCrunch identifier (RRID:SCR_010910, BWA)
SCR_024194https://scicrunch.org/resolver/SCR_024194 SciCrunch identifier (RRID:SCR_024194, Cooler)
SCR_021917https://scicrunch.org/resolver/SCR_021917 SciCrunch identifier (RRID:SCR_021917, CNVkit)
SCR_016368https://scicrunch.org/resolver/SCR_016368 SciCrunch identifier (RRID:SCR_016368, Bowtie 2)
SCR_016366https://scicrunch.org/resolver/SCR_016366 SciCrunch identifier (RRID:SCR_016366, Deeptools)
SCR_026118https://scicrunch.org/resolver/SCR_026118 SciCrunch identifier (RRID:SCR_026118, cooltools)
SCR_026154https://scicrunch.org/resolver/SCR_026154 SciCrunch identifier (RRID:SCR_026154, Gene Expression Profiling Interactive Analysis 2)
SCR_002630https://scicrunch.org/resolver/SCR_002630 SciCrunch identifier (RRID:SCR_002630, GitHub)
SCR_003070https://scicrunch.org/resolver/SCR_003070 SciCrunch identifier (RRID:SCR_003070, ImageJ)
SCR_018169https://scicrunch.org/resolver/SCR_018169 SciCrunch identifier (RRID:SCR_018169, Leica SP8 LIGHTNING confocal microscope)
SCR_023038https://scicrunch.org/resolver/SCR_023038 SciCrunch identifier (RRID:SCR_023038, pairtools)
SCR_006525https://scicrunch.org/resolver/SCR_006525 SciCrunch identifier (RRID:SCR_006525, Picard)
SCR_013027https://scicrunch.org/resolver/SCR_013027 SciCrunch identifier (RRID:SCR_013027, RSEM)
SCR_027011https://scicrunch.org/resolver/SCR_027011 SciCrunch identifier (RRID:SCR_027011, SEACR)
SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)
SCR_014983https://scicrunch.org/resolver/SCR_014983 SciCrunch identifier (RRID:SCR_014983, Illumina NextSeq 500)
SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)
github.c...in.githttps://github.com/marianoimperatore/MeanFieldChromatin.git Supplemental material (code)
github.com/xieting0603https://github.com/xieting0603 Supplemental material (code)
bushmanl...18.tsvhttp://www.bushmanlab.org/assets/doc/allOnco_May2018.tsv Supplemental material (data, reused)
github.com/TaoYang-dev/hicrephttps://github.com/TaoYang-dev/hicrep Supplemental material (code, reused)
github.com/XiaoTaoWang/EagleChttps://github.com/XiaoTaoWang/EagleC Supplemental material (code, reused)
github.c...pelinehttps://github.com/ENCODE-DCC/rna-seq-pipeline Supplemental material (code, reused)
github.c...Finderhttps://github.com/XiaoTaoWang/NeoLoopFinder Supplemental material (code, reused)
goeseek.gwdguser.de/studies/108https://goeseek.gwdguser.de/studies/108 Supplemental material (goeseek study)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2023/04/21/2023.04.20.537702/DC1/embed/media-1.xlsx?download=true Supplemental material (table)
10.5281/zenodo.55324https://doi.org/10.5281/zenodo.55324 Zenodo identifier (10.5281/zenodo.55324, reused)
10.5281/zenodo.4669966https://doi.org/10.5281/zenodo.4669966 Zenodo identifier (10.5281/zenodo.4669966, reused)