| Property |
Value |
| Working Groups |
RG Papantonis |
| Subproject |
P03 |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
38724522 |
| DOI |
10.1038/s41467-024-48053-2 |
| Publication Year |
2024 |
| Title |
Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs |
| Journal |
Nature Communications |
| ISSN |
2041-1723 |
| eISSN |
2041-1723 |
| URL |
http://dx.doi.org/10.1038/s41467-024-48053-2 |
| Issue |
1 |
| Volume |
15 |
| Journal Abbreviation |
Nat Commun |
| Authors |
Xie T, Danieli-Mackay A, Buccarelli M, Barbieri M, Papadionysiou I, D’Alessandris QG, Robens C, Übelmesser N, Vinchure OS, Lauretti L, Fotia G, Schwarz RF, Wang X, Ricci-Vitiani L, Gopalakrishnan J, Pallini R, Papantonis A |
| First Author |
Xie T |
| Last Author |
Papantonis A |
External Resources
nature.c...-2.pdfhttps://www.nature.com/articles/s41467-024-48053-2.pdf Article fulltext
2/143475https://publications.goettingen-research-online.de/handle/2/143475 GRO.publications identifier
GSE229966https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229966 NCBI GEO Dataset (GSE229966)
GSE97619https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97619 NCBI GEO Dataset (GSE97619, reused)
SRP103788https://www.ncbi.nlm.nih.gov/sra/SRP103788 NCBI Sequence Read Archive (SRP103788)
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
0000-0002-6648-7697https://orcid.org/0000-0002-6648-7697 ORCID identifier (Ting Xie)
0000-0001-7337-3797https://orcid.org/0000-0001-7337-3797 ORCID identifier (Adi Danieli-Mackay)
0000-0003-1157-4694https://orcid.org/0000-0003-1157-4694 ORCID identifier (Mariachiara Buccarelli)
0000-0002-9080-631Xhttps://orcid.org/0000-0002-9080-631X ORCID identifier (Mariano Barbieri)
0000-0002-2953-9291https://orcid.org/0000-0002-2953-9291 ORCID identifier (Quintino Giorgio D'Alessandris)
0009-0008-6712-8953https://orcid.org/0009-0008-6712-8953 ORCID identifier (Claudia Robens)
0000-0003-3141-1526https://orcid.org/0000-0003-3141-1526 ORCID identifier (Nadine Übelmesser)
0000-0003-0809-4235https://orcid.org/0000-0003-0809-4235 ORCID identifier (Omkar Suhas Vinchure)
0000-0002-6463-055Xhttps://orcid.org/0000-0002-6463-055X ORCID identifier (Liverana Lauretti)
0000-0002-6445-3872https://orcid.org/0000-0002-6445-3872 ORCID identifier (Giorgio Fotia)
0000-0001-9155-4268https://orcid.org/0000-0001-9155-4268 ORCID identifier (Roland F. Schwarz)
0000-0002-3531-2157https://orcid.org/0000-0002-3531-2157 ORCID identifier (Xiaotao Wang)
0000-0001-7336-5615https://orcid.org/0000-0001-7336-5615 ORCID identifier (Lucia Ricci-Vitiani)
0000-0001-5907-3982https://orcid.org/0000-0001-5907-3982 ORCID identifier (Jay Gopalakrishnan)
0000-0002-4611-8827https://orcid.org/0000-0002-4611-8827 ORCID identifier (Roberto Pallini)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073 ORCID identifier (Argyris Papantonis)
10https://rdp.sfb1565.uni-goettingen.de/literature/publications/10 Published Data Registry entry (CRC 1565, preprint)
4/15https://rdp.sfb1565.uni-goettingen.de/archive/4/15 Research Data Archive (supplemental material)
00rg70c39https://ror.org/00rg70c39 ROR identifier (00rg70c39, Agostino Gemelli University Polyclinic)
03jdxdk20https://ror.org/03jdxdk20 ROR identifier (03jdxdk20, Center for Advanced Studies Research and Development in Sardinia)
034t30j35https://ror.org/034t30j35 ROR identifier (034t30j35, Chinese Academy of Sciences)
006k2kk72https://ror.org/006k2kk72 ROR identifier (006k2kk72, Düsseldorf University Hospital)
05qpz1x62https://ror.org/05qpz1x62 ROR identifier (05qpz1x62, Friedrich Schiller University Jena)
013q1eq08https://ror.org/013q1eq08 ROR identifier (013q1eq08, Fudan University)
024z2rq82https://ror.org/024z2rq82 ROR identifier (024z2rq82, Heinrich Heine University Düsseldorf)
02hssy432https://ror.org/02hssy432 ROR identifier (02hssy432, Istituto Superiore di Sanità)
035rzkx15https://ror.org/035rzkx15 ROR identifier (035rzkx15, Jena University Hospital)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
00rcxh774https://ror.org/00rcxh774 ROR identifier (00rcxh774, University of Cologne)
SCR_025854https://scicrunch.org/resolver/SCR_025854 SciCrunch identifier (RRID:SCR_025854, Arriba)
SCR_016368https://scicrunch.org/resolver/SCR_016368 SciCrunch identifier (RRID:SCR_016368, Bowtie2)
SCR_022192https://scicrunch.org/resolver/SCR_022192 SciCrunch identifier (RRID:SCR_022192, BWA-MEM2)
SCR_014555https://scicrunch.org/resolver/SCR_014555 SciCrunch identifier (RRID:SCR_014555, cBioPortal)
SCR_021917https://scicrunch.org/resolver/SCR_021917 SciCrunch identifier (RRID:SCR_021917, CNVkit)
SCR_024194https://scicrunch.org/resolver/SCR_024194 SciCrunch identifier (RRID:SCR_024194, cooler)
SCR_026118https://scicrunch.org/resolver/SCR_026118 SciCrunch identifier (RRID:CR_026118, cooltools)
SCR_006178https://scicrunch.org/resolver/SCR_006178 SciCrunch identifier (RRID:SCR_006178, DisGeNET)
SCR_026154https://scicrunch.org/resolver/SCR_026154 SciCrunch identifier (RRID:SCR_026154, Gene Expression Profiling Interactive Analysis 2)
SCR_016387https://scicrunch.org/resolver/SCR_016387 SciCrunch identifier (RRID:SCR_016387, Illumina NovaSeq 6000 Sequencing System)
SCR_003070https://scicrunch.org/resolver/SCR_003070 SciCrunch identifier (RRID:SCR_003070, ImageJ)
SCR_023038https://scicrunch.org/resolver/SCR_023038 SciCrunch identifier (RRID:SCR_023038, pairtools)
SCR_027916https://scicrunch.org/resolver/SCR_027916 SciCrunch identifier (RRID:SCR_027916, peakachu)
SCR_006525https://scicrunch.org/resolver/SCR_006525 SciCrunch identifier (RRID:SCR_006525, Picard)
SCR_000262https://scicrunch.org/resolver/SCR_000262 SciCrunch identifier (RRID:SCR_000262, RSEM)
SCR_027011https://scicrunch.org/resolver/SCR_027011 SciCrunch identifier (RRID:SCR_027011, SEACR)
SCR_026610https://scicrunch.org/resolver/SCR_026610 SciCrunch identifier (RRID:SCR_026610, ssGSEA 2.0)
SCR_004463https://scicrunch.org/resolver/SCR_004463 SciCrunch identifier (RRID:SCR_004463, STAR)
SCR_004129https://scicrunch.org/resolver/SCR_004129 SciCrunch identifier (RRID:SCR_004129, Zenodo)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM1_ESM.pdf Supplemental material
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM3_ESM.pdf Supplemental material
github.com/xieting0603/GBMhttps://github.com/xieting0603/GBM Supplemental material (code)
github.c...in.githttps://github.com/marianoimperatore/MeanFieldChromatin.git Supplemental material (code)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM2_ESM.pdf Supplemental material (peer review)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM6_ESM.pdf Supplemental material (reporting summary)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM7_ESM.xlsx Supplemental material (source data)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM4_ESM.xlsx Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-48053-2/MediaObjects/41467_2024_48053_MOESM5_ESM.xlsx Supplemental material (table)
10.5281/zenodohttps://doi.org/10.5281/zenodo Zenodo identifier (10.5281/zenodo, reused)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0005 |
|
primary |
CTCF |
AB_2614975 |
CTCF antibody (pAb) |
| primary-0418 |
|
primary |
MKI67 |
AB_2142366 |
Anti-Ki-67 Antibody |
| primary-0419 |
|
primary |
Myc |
AB_2148585 |
c-MYC Polyclonal antibody |
| primary-0420 |
|
primary |
H3K27ac |
AB_2561016 |
H3K27ac-mouse |