Published Data Registry

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Title	Authors	Journal	Publication Year	DOI PMID
Increasingly efficient chromatin binding of cohesin and CTCF supports chromatin architecture formation during zebrafish embryogenesis	Coßmann J, Kos PI, (...), Gebhardt JCM	Nature Communications	2025	10.1038/s41467-025-56889-5 39979259
RNA polymerase II transcription compartments — from factories to condensates	Rippe K, Papantonis A	Nature Reviews Genetics	2025	10.1038/s41576-025-00859-6 40537661
Two distinct chromatin modules regulate proinflammatory gene expression	Seufert I, Gerosa I, (...), Rippe K	Nature Cell Biology	2025	10.1038/s41556-025-01819-2 41444469
Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides	Ghosh Dastidar N, Freyer NS, (...), Wohlgemuth I	Nature Communications	2025	10.1038/s41467-025-65298-7 41162373
RNA-modification by Base Exchange: Structure, Function and Application of tRNA-guanine Transglycosylases	Reuter K, Ficner R	Journal of Molecular Biology	2025	10.1016/j.jmb.2025.168980 39956694
Poster: Integration of Open Source electronic laboratory notebooks for the biomedical Research Data Management Framework at Göttingen Campus	Smolorz SA, Mathes T, (...), Kusch H	Zenodo	2025	10.5281/zenodo.14833177
Structural and functional insights into tRNA recognition by human tRNA guanine transglycosylase	Sievers K, Neumann P, (...), Ficner R	Structure	2024	10.1016/j.str.2023.12.006 38181786
Rapid and synchronous chemical induction of replicative‐like senescence via a small molecule inhibitor	Palikyras S, Sofiadis K, (...), Papantonis A	Aging Cell	2024	10.1111/acel.14083 38196311
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization	Oberbeckmann E, Quililan K, Cramer P, Oudelaar AM	Nature Genetics	2024	10.1038/s41588-023-01649-8 38291333
Hypoxia-driven deSUMOylation of EXOSC10 promotes adaptive changes in the transcriptome profile	Filippopoulou C, Thomé CC, (...), Chachami G	Cellular and Molecular Life Sciences	2024	10.1007/s00018-023-05035-9 38279024
Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair	Kokic G, Yakoub G, (...), Luijsterburg MS	Nature Structural & Molecular Biology	2024	10.1038/s41594-023-01207-0 38316879
Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1	Düring J, Wolter M, (...), Lorenz S	Nature Structural & Molecular Biology	2024	10.1038/s41594-023-01203-4 38332367
RfaA (YqhY), a novel adaptor protein, controls metabolite-sensitive protein degradation in Bacillus subtilis	Wicke D, Lentes S, (...), Stülke J	bioRxiv	2024	10.1101/2024.02.19.580884
Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins	Zhang Z, Kumar V, (...), Lührmann R	EMBO Journal	2024	10.1038/s44318-024-00052-1 38383864
Structure of the multi-subunit chloroplast RNA polymerase	do Prado PF, Ahrens FM, (...), Hillen HS	Molecular Cell	2024	10.1016/j.molcel.2024.02.003 38428434
Atomic Mutagenesis of N6-Methyladenosine Reveals Distinct Recognition Modes by Human m6A Reader and Eraser Proteins	Seitz F, Jungnickel T, (...), Höbartner C	Journal of the American Chemical Society	2024	10.1021/jacs.4c00626 38445613
Genome organization across scales: mechanistic insights from in vitro reconstitution studies	Oberbeckmann E, Oudelaar AM	Biochemical Society Transactions	2024	10.1042/bst20230883 38451192
RfaA (YqhY), a novel adaptor protein, controls metabolite-sensitive protein degradation in Bacillus subtilis	Wicke D, Lentes S, (...), Stülke J	Researchsquare	2024	10.21203/rs.3.rs-3970019/v1
Structural basis of Integrator-dependent RNA polymerase II termination	Fianu I, Ochmann M, (...), Cramer P	Nature	2024	10.1038/s41586-024-07269-4 38570683
Molecular basis of human nuclear and mitochondrial tRNA 3'-processing	Bhatta A, Kuhle B, (...), Hillen H	bioRxiv	2024	10.1101/2024.04.04.588063
How Natural Enzymes and Synthetic Ribozymes Generate Methylated Nucleotides in RNA	Höbartner C, Bohnsack KE, Bohnsack MT	Annual Review of Biochemistry	2024	10.1146/annurev-biochem-030222-112310 38598854
Coenzyme A biosynthesis in Bacillus subtilis: Discovery of a novel precursor metabolite for salvage and its uptake system	Warneke R, Herzberg C, (...), Stülke J	bioRxiv	2024	10.1101/2024.04.17.589903
Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links	Siraj A, Bouwmeester R, (...), Sachsenberg T	Proteomics	2024	10.1002/pmic.202300144 38629965
Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs	Xie T, Danieli-Mackay A, (...), Papantonis A	Nature Communications	2024	10.1038/s41467-024-48053-2 38724522
Kinetics of programmed and spontaneous ribosome sliding along the mRNA	Senyushkina T, Samatova E, Klimova M, Rodnina M	Nucleic Acids Research	2024	10.1093/nar/gkae396 38783118

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