Published Data Registry

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Title	Authors	Journal	Publication Year	DOI PMID
Selective ubiquitination of drug-like small molecules by the ubiquitin ligase HUWE1	Orth B, Pohl P, (...), Lorenz S	Nature Communications	2025	10.1038/s41467-025-63442-x 40897715
Manipulating mitochondrial gene expression	Dahal D, Cruz-Zargoza LD, Rehling P	Biological Chemistry	2025	10.1515/hsz-2025-0170 40965983
Navigating Data Management Plans: From Terminological Confusion to Practical Implementation	Ketabi A, Kossen R, (...), Krefting D	German Medical Science GMS Publishing House	2025	10.3205/25gmds106
FACT depletion demonstrates a role for nucleosome organization in TAD formation	Mauksch C, Zhu Y, (...), Oudelaar AM	Molecular Systems Biology	2025	10.1038/s44320-025-00165-7 41145704
Phosphoproteomic identification of Mos–MAPK targets in meiotic cell cycle and asymmetric oocyte divisions	Avilov I, Horokhovskyi Y, (...), Lenart P	Journal of Cell Biology	2025	10.1083/jcb.202312140 41123450
Mechanisms and Determinants of −1 Ribosome Frameshifting and Bypassing	Poulis P, Rodnina MV	Cold Spring Harbor Perspectives in Biology	2025	10.1101/cshperspect.a041946 41052926
FASTKD5 processes mitochondrial pre-mRNAs at noncanonical cleavage sites	Antonicka H, Vučković A, (...), Shoubridge E	Nucleic Acids Research	2025	10.1093/nar/gkaf665 40637235
Ca2+-Triggered (de)ubiquitination Events in Synapses	Ainatzi S, Kaufmann SV, (...), Urlaub H	Molecular & Cellular Proteomics	2025	10.1016/j.mcpro.2025.100946 40089065
Ribozyme‐Catalyzed Site‐Specific Labeling of RNA Using O6‐alkylguanine SNAP‐Tag Substrates	Walunj MB, Scheitl CPM, Jungnickel T, Höbartner C	Angewandte Chemie-International Edition	2025	10.1002/anie.202500257 40231624
Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry	Welp L, Wulf A, (...), Urlaub H	Nucleic Acids Research	2025	10.1093/nar/gkaf727 40823814
Cotranslational protein folding through non-native structural intermediates	Wang S, Bitran A, Samatova E, Shakhnovich EI, Rodnina MV	Science Advances	2025	10.1126/sciadv.ady2211 40911678
The functionality of telomerase depends on CPF–CF induced 3′end processing of its RNA component TLC1 and a novel Nrd1–Nab3 surveillance mechanism	Lamping J, Krebber H	Nucleic Acids Research	2025	10.1093/nar/gkaf480 40488281
Alphafold 3 guided insights into the Importin β - Importin 7 heterodimer interaction and its binding to Histone H1	Neumann P, Dybkov O, Urlaub H, Ficner R, Dickmanns A	bioRxiv	2025	10.1101/2025.08.04.668392
UBE3C links ubiquitin signaling to epitranscriptomic control of cortical neurogenesis	Borisova E, Cuthill KJ, (...), Ambrozkiewicz MC	bioRxiv	2025	10.1101/2025.04.09.646620
NAC controls nascent chain fate through tunnel sensing and chaperone action	Lee JH, Rabl L, (...), Frydman J	bioRxiv	2025	10.1101/2025.07.27.667080
The Ski2 helicase ASCC3 unwinds DNA upon fork stalling to control replication stress responses	Cui S, Batenburg NL, (...), Zhu X	bioRxiv	2025	10.1101/2025.07.24.666583
NAC controls nascent chain fate through tunnel sensing and chaperone action	Lee JH, Rabl L, (...), Frydman J	Nature	2025	10.1038/s41586-025-10058-2 41430436
Increasingly efficient chromatin binding of cohesin and CTCF supports chromatin architecture formation during zebrafish embryogenesis	Coßmann J, Kos PI, (...), Gebhardt JCM	Nature Communications	2025	10.1038/s41467-025-56889-5 39979259
RNA polymerase II transcription compartments — from factories to condensates	Rippe K, Papantonis A	Nature Reviews Genetics	2025	10.1038/s41576-025-00859-6 40537661
Two distinct chromatin modules regulate proinflammatory gene expression	Seufert I, Gerosa I, (...), Rippe K	Nature Cell Biology	2025	10.1038/s41556-025-01819-2 41444469
Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides	Ghosh Dastidar N, Freyer NS, (...), Wohlgemuth I	Nature Communications	2025	10.1038/s41467-025-65298-7 41162373
RNA-modification by Base Exchange: Structure, Function and Application of tRNA-guanine Transglycosylases	Reuter K, Ficner R	Journal of Molecular Biology	2025	10.1016/j.jmb.2025.168980 39956694
Structural and functional insights into tRNA recognition by human tRNA guanine transglycosylase	Sievers K, Neumann P, (...), Ficner R	Structure	2024	10.1016/j.str.2023.12.006 38181786
Rapid and synchronous chemical induction of replicative‐like senescence via a small molecule inhibitor	Palikyras S, Sofiadis K, (...), Papantonis A	Aging Cell	2024	10.1111/acel.14083 38196311
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization	Oberbeckmann E, Quililan K, Cramer P, Oudelaar AM	Nature Genetics	2024	10.1038/s41588-023-01649-8 38291333

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