Published Data Registry

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Title	Authors	Journal	Publication Year	DOI PMID
Analysis of multi-way chromatin interactions at sub-nucleosome resolution identifies synergistic nano-scale interactions within super-enhancers	Ramasamy S, Zhu Y, Karpinska MA, Flyamer IM, Söding J, Oudelaar AM	bioRxiv	2026	10.64898/2026.05.21.726779
A feedback loop connects 18S rRNA 3’ end maturation by the phosphorylated endoribonuclease NOB1 to early small subunit biogenesis	Bloch von Blottnitz KI, Honemann-Capito M, (...), Bohnsack KE	RNA	2026
Molecular basis of human nuclear and mitochondrial tRNA 3′ processing	Bhatta A, Kuhle B, (...), Hillen HS	Nature Structural & Molecular Biology	2025	10.1038/s41594-024-01445-w 39747487
An avoidance segment resolves a lethal nuclear–mitochondrial targeting conflict during ribosome assembly	Oborská-Oplová M, Geiger AG, (...), Panse VG	Nature Cell Biology	2025	10.1038/s41556-024-01588-4 39890954
The plastid-encoded RNA polymerase of plant chloroplasts	Ahrens FM, do Prado PF, Hillen HS, Pfannschmidt T	Trends in Plant Science	2025	10.1016/j.tplants.2025.01.010 40011163
PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division	Gobran M, Politi AZ, Welp L, Jakobi J, Urlaub H, Lenart P	EMBO Journal	2025	10.1038/s44318-025-00400-9 40033019
Structural basis of Nipah virus RNA synthesis	Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS	Nature Communications	2025	10.1038/s41467-025-57219-5 40050611
Mechanisms of Enhancer-Mediated Gene Activation in the Context of the 3D Genome	Papantonis A, Oudelaar AM	Annual Review of Genomics and Human Genetics	2025	10.1146/annurev-genom-120423-012301 40030157
Author Correction: Structural basis of Nipah virus RNA synthesis	Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS	Nature Communications	2025	10.1038/s41467-025-58404-2 40148352
Coupling of ribosome biogenesis and translation initiation in human mitochondria	Heinrichs M, Finke AF, (...), Richter-Dennerlein R	Nature Communications	2025	10.1038/s41467-025-58827-x 40240327
Ribozyme‐catalyzed site‐specific labeling of RNA using O6‐alkylguanine SNAP‐tag substrates	Walunj MB, Scheitl CP, Jungnickel T, Höbartner C	Angewandte Chemie	2025	10.1002/ange.202500257
CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation	Karpinska MA, Zhu Y, (...), Oudelaar AM	Nature Structural & Molecular Biology	2025	10.1038/s41594-025-01555-z 40360814
Silencing mitochondrial gene expression in living cells	Cruz-Zaragoza LD, Dahal D, (...), Rehling P	Science	2025	10.1126/science.adr3498 40403134
The hidden power of antisense long non-coding RNAs: a dive into a novel regulatory layer mediated by double-stranded RNA formation	Lamping J, Krebber H	RNA Biology	2025	10.1080/15476286.2025.2530797 40629869
tRNA as an assembly chaperone for a macromolecular transcription-processing complex	Bartuli J, Jungwirth S, (...), Fischer U	Nature Structural & Molecular Biology	2025	10.1038/s41594-025-01653-y 40908366
Selective ubiquitination of drug-like small molecules by the ubiquitin ligase HUWE1	Orth B, Pohl P, (...), Lorenz S	Nature Communications	2025	10.1038/s41467-025-63442-x 40897715
Manipulating mitochondrial gene expression	Dahal D, Cruz-Zargoza LD, Rehling P	Biological Chemistry	2025	10.1515/hsz-2025-0170 40965983
Navigating Data Management Plans: From Terminological Confusion to Practical Implementation	Ketabi A, Kossen R, (...), Krefting D	German Medical Science GMS Publishing House	2025	10.3205/25gmds106
FACT depletion demonstrates a role for nucleosome organization in TAD formation	Mauksch C, Zhu Y, (...), Oudelaar AM	Molecular Systems Biology	2025	10.1038/s44320-025-00165-7 41145704
Phosphoproteomic identification of Mos–MAPK targets in meiotic cell cycle and asymmetric oocyte divisions	Avilov I, Horokhovskyi Y, (...), Lenart P	Journal of Cell Biology	2025	10.1083/jcb.202312140 41123450
Mechanisms and Determinants of −1 Ribosome Frameshifting and Bypassing	Poulis P, Rodnina MV	Cold Spring Harbor Perspectives in Biology	2025	10.1101/cshperspect.a041946 41052926
FASTKD5 processes mitochondrial pre-mRNAs at noncanonical cleavage sites	Antonicka H, Vučković A, (...), Shoubridge E	Nucleic Acids Research	2025	10.1093/nar/gkaf665 40637235
Ca2+-Triggered (de)ubiquitination Events in Synapses	Ainatzi S, Kaufmann SV, (...), Urlaub H	Molecular & Cellular Proteomics	2025	10.1016/j.mcpro.2025.100946 40089065
Ribozyme‐Catalyzed Site‐Specific Labeling of RNA Using O6‐alkylguanine SNAP‐Tag Substrates	Walunj MB, Scheitl CPM, Jungnickel T, Höbartner C	Angewandte Chemie-International Edition	2025	10.1002/anie.202500257 40231624
Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry	Welp L, Wulf A, (...), Urlaub H	Nucleic Acids Research	2025	10.1093/nar/gkaf727 40823814

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