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Publication
PropertyValue
Working Groups RG Oudelaar
SubprojectP02
Open AccessOpen Access Yes
Publication TypeJournal Article
Peer ReviewedYes
DOIDOI 10.1038/s41588-023-01649-8
Publication Year2024
TitleIn vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization
JournalNature Genetics
ISSN1061-4036
eISSN1546-1718
URL https://www.nature.com/articles/s41588-023-01649-8
Journal AbbreviationNat Genet
AuthorsOberbeckmann E, Quililan K, Cramer P, Oudelaar AM
First AuthorOberbeckmann E
Last AuthorOudelaar AM

 External Resources

 nature.c...-8.pdf  Article fulltext

 GSE220647  NCBI GEO Dataset (GSE220647)

 GSM2262329  NCBI GEO Dataset (GSM2262329)

 GSM2262330  NCBI GEO Dataset (GSM2262330)

 GSM2262331  NCBI GEO Dataset (GSM2262331)

 GSM2916410  NCBI GEO Dataset (GSM2916410)

 GSM2916412  NCBI GEO Dataset (GSM2916412)

 GSM4449154  NCBI GEO Dataset (GSM4449154)

 GSM4449823  NCBI GEO Dataset (GSM4449823)

 7111  NCBI taxonomy (cabbage looper, Trichoplusia ni)

 4932  NCBI taxonomy (yeast, Saccharomyces cerevisiae)

 0000-0001-9123-5689  ORCID identifier (Elisa Oberbeckmann)

 0000-0001-5454-7755  ORCID identifier (Patrick Cramer)

 0000-0002-3425-0476  ORCID identifier (A. Marieke Oudelaar)

 4/11  Research Data Archive (supplemental material)

 03av75f26  ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 SCR_011919  SciCrunch identifier (RRID:SCR_011919, BLAT)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_016368  SciCrunch identifier (RRID:SCR_016368, Bowtie 2)

 SCR_005531  SciCrunch identifier (RRID:SCR_005531, FLASH)

 SCR_016381  SciCrunch identifier (RRID:SCR_016381, Illumina NextSeq 550 System)

 SCR_011793  SciCrunch identifier (RRID:SCR_011793, Integrative Genomics Viewer)

 SCR_013291  SciCrunch identifier (RRID:SCR_013291, MACS)

 SCR_001783  SciCrunch identifier (RRID:SCR_001783, MEME Suite)

 SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_000432  SciCrunch identifier (RRID:SCR_000432, RStudio)

 SCR_011847  SciCrunch identifier (RRID:SCR_011847, Trim Galore)

 static-c...SM.pdf  Supplemental material

 github.c...ture-C  Supplemental material (code, reused)

 process....emic/1  Supplemental material (code, reused)

 10.5281/zenodo.10361971  Supplemental material (code, reused)

 10.5281/zenodo.10373300  Supplemental material (code, reused)

 goeseek.gwdguser.de/studies/143  Supplemental material (goeseek study)

 static-c...SM.pdf  Supplemental material (peer review)

 static-c...SM.pdf  Supplemental material (reporting summary)

 static-c...M.xlsx  Supplemental material (source data)

 static-c...M.xlsx  Supplemental material (source data)

 static-c...SM.pdf  Supplemental material (source data)

 static-c...SM.pdf  Supplemental material (source data)

 static-c...SM.pdf  Supplemental material (source data)

 static-c...M.xlsx  Supplemental material (table)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0013primaryAB_10063035ANTI-FLAG® M2 Affinity Gel