| Property | Value |
|---|
| Working Groups |  RG Oudelaar,  RG Papantonis |
| Subproject | P02, P03 |
| Open Access |  Yes |
| Publication Type | Preprint |
| Peer Reviewed | No |
| DOI |  10.1101/2024.11.20.624447 |
| Publication Year | 2024 |
| Title | CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation |
| Journal | bioRxiv |
| ISSN | no ISSN (NLM ID:101680187) |
| URL | http://dx.doi.org/10.1101/2024.11.20.624447 |
| Journal Abbreviation | bioRxiv |
| Extra | Final article published in Nature Structural & Molecular Biology here: doi:10.1038/s41594-025-01555-z |
| Authors | Karpinska MA, Zhu Y, Fakhraei Ghazvini Z, Ramasamy S, Barbieri M, Cao NTB, Lidschreiber M, Papantonis A, Oudelaar AM |
| First Author | Karpinska MA |
| Last Author | Oudelaar AM |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2024.11.20.624447v1.full.pdf
Article fulltext
E-MTAB-9010https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-9010
EMBL-EBI ArrayExpress identifier (E-MTAB-9010, reused)
gro-2/150002http://resolver.sub.uni-goettingen.de/purl?gro-2/150002
GRO.publications identifier
GSE263641https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263641
NCBI GEO Dataset (GSE263641)
GSE131620https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131620
NCBI GEO Dataset (GSE131620, reused)
GSE140528https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140528
NCBI GEO Dataset (GSE140528, reused)
0000-0002-1516-2083https://orcid.org/0000-0002-1516-2083
ORCID identifier (Magdalena A. Karpinska)
0009-0008-3909-1321https://orcid.org/0009-0008-3909-1321
ORCID identifier (Yi Zhu)
0000-0002-3246-6484https://orcid.org/0000-0002-3246-6484
ORCID identifier (Zahra Fakhraei Ghazvini)
0000-0003-0617-694Xhttps://orcid.org/0000-0003-0617-694X
ORCID identifier (Shyam Ramasamy)
0000-0002-9080-631Xhttps://orcid.org/0000-0002-9080-631X
ORCID identifier (Mariano Barbieri)
0000-0002-5612-2774https://orcid.org/0000-0002-5612-2774
ORCID identifier (Tran Bich Ngoc Cao)
0000-0002-6740-2755https://orcid.org/0000-0002-6740-2755
ORCID identifier (Michael Lidschreiber)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073
ORCID identifier (Argyris Papantonis)
0000-0002-3425-0476https://orcid.org/0000-0002-3425-0476
ORCID identifier (A. Marieke Oudelaar)
76https://rdp.sfb1565.uni-goettingen.de/literature/publications/76
Published Data Registry entry (CRC 1565, final article)
4/22https://rdp.sfb1565.uni-goettingen.de/archive/4/22
Research Data Archive (supplemental material)
03av75f26https://ror.org/03av75f26
ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
021ft0n22https://ror.org/021ft0n22
ROR identifier (021ft0n22, University Medical Center Göttingen)
SCR_015687https://scicrunch.org/resolver/SCR_015687
SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_012919https://scicrunch.org/resolver/SCR_012919
SciCrunch identifier (RRID:SCR_012919, featureCounts)
SCR_015899https://scicrunch.org/resolver/SCR_015899
SciCrunch identifier (RRID:SCR_015899, STAR)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/11/21/2024.11.20.624447/DC1/embed/media-1.pdf?download=true
Supplemental material
