| Property |
Value |
| Working Groups |
RG Oudelaar, 
RG Papantonis |
| Subproject |
P02, P03 |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2024.11.20.624447 |
| Publication Year |
2024 |
| Title |
CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
http://dx.doi.org/10.1101/2024.11.20.624447 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Nature Structural & Molecular Biology here: doi:10.1038/s41594-025-01555-z |
| Authors |
Karpinska MA, Zhu Y, Fakhraei Ghazvini Z, Ramasamy S, Barbieri M, Cao NTB, Lidschreiber M, Papantonis A, Oudelaar AM |
| First Author |
Karpinska MA |
| Last Author |
Oudelaar AM |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2024.11.20.624447v1.full.pdf Article fulltext
E-MTAB-9010https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-9010 EMBL-EBI ArrayExpress identifier (E-MTAB-9010, reused)
2/150002https://publications.goettingen-research-online.de/handle/2/150002 GRO.publications identifier
GSE263641https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263641 NCBI GEO Dataset (GSE263641)
GSE131620https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131620 NCBI GEO Dataset (GSE131620, reused)
GSE140528https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140528 NCBI GEO Dataset (GSE140528, reused)
0000-0002-1516-2083https://orcid.org/0000-0002-1516-2083 ORCID identifier (Magdalena A. Karpinska)
0009-0008-3909-1321https://orcid.org/0009-0008-3909-1321 ORCID identifier (Yi Zhu)
0000-0002-3246-6484https://orcid.org/0000-0002-3246-6484 ORCID identifier (Zahra Fakhraei Ghazvini)
0000-0003-0617-694Xhttps://orcid.org/0000-0003-0617-694X ORCID identifier (Shyam Ramasamy)
0000-0002-9080-631Xhttps://orcid.org/0000-0002-9080-631X ORCID identifier (Mariano Barbieri)
0000-0002-5612-2774https://orcid.org/0000-0002-5612-2774 ORCID identifier (Tran Bich Ngoc Cao)
0000-0002-6740-2755https://orcid.org/0000-0002-6740-2755 ORCID identifier (Michael Lidschreiber)
0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073 ORCID identifier (Argyris Papantonis)
0000-0002-3425-0476https://orcid.org/0000-0002-3425-0476 ORCID identifier (A. Marieke Oudelaar)
76https://rdp.sfb1565.uni-goettingen.de/literature/publications/76 Published Data Registry entry (CRC 1565, final article)
4/22https://rdp.sfb1565.uni-goettingen.de/archive/4/22 Research Data Archive (supplemental material)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_012919https://scicrunch.org/resolver/SCR_012919 SciCrunch identifier (RRID:SCR_012919, featureCounts)
SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/11/21/2024.11.20.624447/DC1/embed/media-1.pdf?download=true Supplemental material
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0169 |
|
primary |
H2Av |
AB_2737370 |
Spike-in Antibody |
| primary-0170 |
|
primary |
|
AB_469272 |
Fc Receptor Binding Inhibitor Polyclonal Antibody, Functional Grade, eBioscience™ |
| primary-0171 |
|
primary |
CD19 |
AB_400384 |
APC-Cy™7 Mouse Anti-Human CD19 |
| primary-0172 |
|
primary |
CTCF |
AB_2753160 |
CTCF Antibody |
| primary-0173 |
|
primary |
SMC1A |
AB_307121 |
Anti-SMC1A antibody |
| primary-0174 |
|
primary |
CRSP7 |
AB_1907253 |
Rabbit anti-CRSP7 Antibody Affinity Purified |
| primary-0384 |
|
primary |
CD11b |
AB_398456 |
APC Mouse Anti-Human CD11b |