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Publication
PropertyValue
Working Groups RG Papantonis
SubprojectP03
Open AccessOpen Access Yes
Publication TypeJournal Article
Peer ReviewedYes
PMIDPubMed ID 39979259
DOIDOI 10.1038/s41467-025-56889-5
Publication Year2025
TitleIncreasingly efficient chromatin binding of cohesin and CTCF supports chromatin architecture formation during zebrafish embryogenesis
JournalNature Communications
ISSN2041-1723
eISSN2041-1723
URL https://doi.org/10.1038/s41467-025-56889-5
Issue1
Volume16
Journal AbbreviationNat Commun
AuthorsCoßmann J, Kos PI, Varamogianni-Mamatsi V, Assenheimer DS, Bischof TA, Kuhn T, Vomhof T, Papantonis A, Giorgetti L, Gebhardt JCM
First AuthorCoßmann J
Last AuthorGebhardt JCM

 External Resources

 nature.c...-5.pdf  Article fulltext

 10.5061/dryad.3bk3j9ks8  DOI (10.5061/dryad.3bk3j9ks8, Dryad Dataset)

 gro-2/147965  GRO.publications identifier

 GSE130944  NCBI GEO Dataset (GSE130944, reused)

 GSE133437  NCBI GEO Dataset (GSE133437, reused)

 7955  NCBI taxonomy (zebrafish, Danio rerio)

 0000-0002-3625-0939  ORCID identifier (Pavel Kos)

 0009-0006-7800-9920  ORCID identifier (Vassiliki Varamogianni-Mamatsi)

 0009-0000-0201-7373  ORCID identifier (Tobias Bischof)

 0000-0003-0194-7186  ORCID identifier (Thomas Vomhof)

 0000-0001-7551-1073  ORCID identifier (Argyris Papantonis)

 0000-0002-9664-9087  ORCID identifier (Luca Giorgetti)

 0000-0003-1900-600X  ORCID identifier (J. Christof M. Gebhardt)

 5/49  Research Data Archive (supplemental material)

 01bmjkv45  ROR identifier (01bmjkv45, Friedrich Miescher Institute)

 021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 032000t02  ROR identifier (032000t02, Universität Ulm)

 SCR_002285  SciCrunch identifier (RRID:SCR_002285, Fiji)

 SCR_002798  SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

 SCR_014210  SciCrunch identifier (RRID:SCR_014210, Image Lab Software)

 SCR_014325  SciCrunch identifier (RRID:SCR_014325, LabView)

 SCR_001622  SciCrunch identifier (RRID:SCR_001622, MATLAB)

 SCR_014329  SciCrunch identifier (RRID:SCR_014329, NIS-Elements)

 SCR_014551  SciCrunch identifier (RRID:SCR_014551, Olympus cellSens Software)

 static-c...SM.pdf  Supplemental material

 static-c...SM.pdf  Supplemental material

 gitlab.com/GebhardtLab/TrackIt  Supplemental material (code)

 github.com/polly-code/lammps_le  Supplemental material (code)

 goeseek.gwdguser.de/studies/279  Supplemental material (goeseek study)

 static-c...SM.pdf  Supplemental material (peer review)

 static-c...SM.pdf  Supplemental material (reporting summary)

 static-c...M.xlsx  Supplemental material (source data)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 static-c...SM.mp4  Supplemental material (video)

 10.5281/zenodo.7092295  Zenodo identifier (10.5281/zenodo.7092295)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0239primaryRAD21primary anti-Rad21 antibody
primary-0241primaryCTCFAB_11144295anti-CTCF antibody
primary-0242primaryTUBG1AB_297920anti-γ-Tubulin antibody
primary-0243primaryH2BantiHistone H2B antibody
primary-0244primarySMC3Anti-Smc3 antibody
primary-0245primaryHAAB_2533049anti-HA Tag antibody