| Property |
Value |
| Working Groups |
RG Bohnsack K.E. |
| Subproject |
P12 |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2023.06.23.546038 |
| Publication Year |
2023 |
| Title |
Hypoxia-driven deSUMOylation of EXOSC10 promotes adaptive changes in the transcriptome profile |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
http://dx.doi.org/10.1101/2023.06.23.546038 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Cellular and Molecular Life Sciences here: doi:10.1007/s00018-023-05035-9 |
| Authors |
Filippopoulou C, Thome CC, Perdikari S, Ntini E, Simos G, Bohnsack KE, Chachami G |
| First Author |
Filippopoulou C |
| Last Author |
Chachami G |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2023.06.23.546038v1.full.pdf Article fulltext
2/139969https://publications.goettingen-research-online.de/handle/2/139969 GRO.publications identifier
GSE229894https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229894 NCBI GEO Dataset (GSE229894)
NM_001001998.3https://www.ncbi.nlm.nih.gov/nuccore/NM_001001998.3 NCBI nucleotide (NM_001001998.3, reused)
0000-0003-1432-5837https://orcid.org/0000-0003-1432-5837 ORCID identifier (Chrysa Filippopoulou)
0000-0002-4649-6051https://orcid.org/0000-0002-4649-6051 ORCID identifier (Evgenia Ntini)
0000-0001-5453-3185https://orcid.org/0000-0001-5453-3185 ORCID identifier (George Simos)
0000-0001-6035-4255https://orcid.org/0000-0001-6035-4255 ORCID identifier (Katherine Elizabeth Bohnsack)
0000-0002-4771-4196https://orcid.org/0000-0002-4771-4196 ORCID identifier (Georgia Chachami)
31https://rdp.sfb1565.uni-goettingen.de/literature/publications/31 Published Data Registry entry (CRC 1565, final article)
4/8https://rdp.sfb1565.uni-goettingen.de/archive/4/8 Research Data Archive (supplemental material)
052rphn09https://ror.org/052rphn09 ROR identifier (052rphn09, Foundation for Research and Technology Hellas)
01pxwe438https://ror.org/01pxwe438 ROR identifier (01pxwe438, McGill University)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
04v4g9h31https://ror.org/04v4g9h31 ROR identifier (04v4g9h31, University of Thessaly)
CVCL_U427https://scicrunch.org/resolver/CVCL_U427 SciCrunch identifier (RRID:CVCL_U427, HEK293 Flp-In T-REx)
CVCL_0030https://scicrunch.org/resolver/CVCL_0030 SciCrunch identifier (RRID:CVCL_0030, HeLa)
CVCL_C4EThttps://scicrunch.org/resolver/CVCL_C4ET SciCrunch identifier (RRID:CVCL_C4ET, HeLa Flp-In T-REx)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_014583https://scicrunch.org/resolver/SCR_014583 SciCrunch identifier (RRID:SCR_014583, FASTQC)
SCR_002285https://scicrunch.org/resolver/SCR_002285 SciCrunch identifier (RRID:SCR_002285, Fiji)
SCR_014966https://scicrunch.org/resolver/SCR_014966 SciCrunch identifier (RRID:SCR_014966, Gencode)
SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)
SCR_016386https://scicrunch.org/resolver/SCR_016386 SciCrunch identifier (RRID:SCR_016386, HiSeq 4000 Sequencing System)
SCR_003070https://scicrunch.org/resolver/SCR_003070 SciCrunch identifier (RRID:SCR_003070, ImageJ)
SCR_015795https://scicrunch.org/resolver/SCR_015795 SciCrunch identifier (RRID:SCR_015795, LI-COR Image Studio Software)
SCR_018626https://scicrunch.org/resolver/SCR_018626 SciCrunch identifier (RRID:SCR_018626, Roche LightCycler 480 Real Time PCR System)
SCR_004463https://scicrunch.org/resolver/SCR_004463 SciCrunch identifier (RRID:SCR_004463, STAR)
SCR_019957https://scicrunch.org/resolver/SCR_019957 SciCrunch identifier (RRID:SCR_019957, Typhoon FLA 9500)
SCR_018876https://scicrunch.org/resolver/SCR_018876 SciCrunch identifier (RRID:SCR_018876, Zeiss Axio Imager 2)
SCR_013672https://scicrunch.org/resolver/SCR_013672 SciCrunch identifier (RRID:SCR_013672, ZEISS ZEN Microscopy Software)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2023/06/23/2023.06.23.546038/DC1/embed/media-1.pdf?download=true Supplemental material
goeseek.gwdguser.de/studies/109https://goeseek.gwdguser.de/studies/109 Supplemental material (goeseek study)
biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2023/06/23/2023.06.23.546038/DC2/embed/media-2.xlsx?download=true Supplemental material (table)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0098 |
 |
primary |
FLAG |
AB_262044 |
Monoclonal ANTI-FLAG® M2 antibody |
| primary-0188 |
|
primary |
UBB |
AB_10611436 |
Ubiquitin Antikörper (F-11) |
| primary-0189 |
|
primary |
SENP1 |
AB_10611042 |
SENP1 Antikörper (C-12) |
| primary-0191 |
|
primary |
EXOSC10 |
AB_10990273 |
EXOSC10 Antikörper (B-8) |
| primary-0192 |
|
primary |
UBTF |
AB_671403 |
UBF Antikörper (F-9) |
| primary-0193 |
|
primary |
DIS3 |
AB_2091025 |
DIS3 Polyklonaler Antikörper |
| primary-0194 |
|
primary |
MPHOSPH6 |
AB_2282161 |
MPHOSPH6 Polyclonal antibody |
| primary-0195 |
|
primary |
SKIV2L2 |
AB_2187479 |
SKIV2L2 Polyclonal antibody |
| primary-0196 |
|
primary |
C1D |
AB_2067014 |
C1D Polyclonal antibody |
| primary-0197 |
|
primary |
EXOSC3 |
AB_2278183 |
EXOSC3 Polyclonal antibody |
| primary-0198 |
|
primary |
USP36 |
AB_2213357 |
USP36 Polyclonal antibody |
| primary-0199 |
|
primary |
USP36 |
AB_2923684 |
USP36 Monoclonal antibody |
| primary-0200 |
|
primary |
EXOSC2 |
AB_2881498 |
EXOSC2 Monoclonal antibody |
| primary-0201 |
|
primary |
KS6B1 |
AB_2269803 |
Phospho-p70 S6 Kinase (Thr389) (108D2) Rabbit mAb |
| primary-0202 |
|
primary |
ARF |
AB_2923025 |
p14 ARF (E3X6D) Rabbit mAb |
| primary-0203 |
|
primary |
FBRL |
AB_2278087 |
Fibrillarin (C13C3) Rabbit mAb |
| primary-0204 |
|
primary |
SENP3 |
AB_10694546 |
SENP3 (D20A10) XP® Rabbit mAb |
| primary-0205 |
|
primary |
HA |
AB_1549585 |
HA-Tag (C29F4) Rabbit mAb |
| primary-0206 |
|
primary |
|
AB_2715541 |
β-Tubulin (D3U1W) Mouse mAb |
| primary-0207 |
|
primary |
HIF1 |
AB_398272 |
Purified Mouse Anti-Human HIF-1α |
| primary-0208 |
|
primary |
EPAS1 |
AB_10002593 |
HIF-2 alpha/EPAS1 Antibodies |
| primary-0209 |
|
primary |
|
AB_399841 |
Purified Mouse Anti-Phosphoserine |